Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.06■□□□□ 0.32
LDB1Q86U70 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.06■□□□□ 0.32
LDB1Q86U70 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.06■□□□□ 0.32
LDB1Q86U70 MTDHP4-201ENST00000600287 670 ntBASIC17.06■□□□□ 0.32
LDB1Q86U70 AL353135.1-201ENST00000606729 504 ntBASIC17.06■□□□□ 0.32
LDB1Q86U70 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LDB1Q86U70 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.06■□□□□ 0.32
LDB1Q86U70 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LDB1Q86U70 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 PCDHA14-201ENST00000506751 2298 ntBASIC17.06■□□□□ 0.32
LDB1Q86U70 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
LDB1Q86U70 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB1Q86U70 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.06■□□□□ 0.32
LDB1Q86U70 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LDB1Q86U70 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB1Q86U70 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
LDB1Q86U70 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
LDB1Q86U70 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 AL590787.1-201ENST00000568856 1315 ntBASIC17.05■□□□□ 0.32
LDB1Q86U70 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.05■□□□□ 0.32
LDB1Q86U70 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LDB1Q86U70 EMBP1-201ENST00000458200 901 ntBASIC17.05■□□□□ 0.32
LDB1Q86U70 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.05■□□□□ 0.32
LDB1Q86U70 AC021087.4-201ENST00000563761 564 ntBASIC17.05■□□□□ 0.32
LDB1Q86U70 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.05■□□□□ 0.32
LDB1Q86U70 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 LINC01711-201ENST00000598340 967 ntBASIC17.05■□□□□ 0.32
LDB1Q86U70 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LDB1Q86U70 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.05■□□□□ 0.32
LDB1Q86U70 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LDB1Q86U70 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.04■□□□□ 0.32
LDB1Q86U70 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LDB1Q86U70 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.04■□□□□ 0.32
LDB1Q86U70 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.04■□□□□ 0.32
LDB1Q86U70 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB1Q86U70 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
LDB1Q86U70 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.04■□□□□ 0.32
LDB1Q86U70 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.04■□□□□ 0.32
LDB1Q86U70 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.04■□□□□ 0.32
LDB1Q86U70 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB1Q86U70 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 NCF1C-201ENST00000438382 1427 ntBASIC17.04■□□□□ 0.32
LDB1Q86U70 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LDB1Q86U70 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.04■□□□□ 0.32
LDB1Q86U70 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDB1Q86U70 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB1Q86U70 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB1Q86U70 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB1Q86U70 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LDB1Q86U70 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB1Q86U70 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDB1Q86U70 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.03■□□□□ 0.32
LDB1Q86U70 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB1Q86U70 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDB1Q86U70 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LDB1Q86U70 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LDB1Q86U70 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms