Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH1Q08174 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 AC005915.1-201ENST00000624912 2018 ntBASIC16.48■□□□□ 0.23
PCDH1Q08174 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH1Q08174 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PCDH1Q08174 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDH1Q08174 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH1Q08174 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH1Q08174 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
PCDH1Q08174 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDH1Q08174 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH1Q08174 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PCDH1Q08174 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDH1Q08174 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 AC139887.3-201ENST00000568585 713 ntBASIC16.48■□□□□ 0.23
PCDH1Q08174 CLEC4GP1-201ENST00000596555 870 ntBASIC16.48■□□□□ 0.23
PCDH1Q08174 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDH1Q08174 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDH1Q08174 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDH1Q08174 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDH1Q08174 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDH1Q08174 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.47■□□□□ 0.23
PCDH1Q08174 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
PCDH1Q08174 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 PAWRP1-201ENST00000451083 565 ntBASIC16.47■□□□□ 0.23
PCDH1Q08174 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDH1Q08174 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
PCDH1Q08174 AF238378.1-201ENST00000526806 358 ntBASIC16.47■□□□□ 0.23
PCDH1Q08174 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 LINC01711-201ENST00000598340 967 ntBASIC16.47■□□□□ 0.23
PCDH1Q08174 MTDHP4-201ENST00000600287 670 ntBASIC16.47■□□□□ 0.23
PCDH1Q08174 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH1Q08174 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PCDH1Q08174 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH1Q08174 AC011676.5-201ENST00000624864 2660 ntBASIC16.46■□□□□ 0.23
PCDH1Q08174 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PCDH1Q08174 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PCDH1Q08174 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
PCDH1Q08174 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH1Q08174 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PCDH1Q08174 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH1Q08174 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH1Q08174 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH1Q08174 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH1Q08174 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH1Q08174 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH1Q08174 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH1Q08174 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH1Q08174 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PCDH1Q08174 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH1Q08174 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDH1Q08174 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDH1Q08174 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PCDH1Q08174 AC025062.2-201ENST00000605477 670 ntBASIC16.46■□□□□ 0.23
PCDH1Q08174 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms