Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
CTCFP49711 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.66■□□□□ 0.74
CTCFP49711 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.66■□□□□ 0.74
CTCFP49711 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
CTCFP49711 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC19.66■□□□□ 0.74
CTCFP49711 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.66■□□□□ 0.74
CTCFP49711 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.66■□□□□ 0.74
CTCFP49711 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC19.66■□□□□ 0.74
CTCFP49711 CHCHD2P3-201ENST00000603038 451 ntBASIC19.66■□□□□ 0.74
CTCFP49711 AL139099.5-201ENST00000635274 300 ntBASIC19.66■□□□□ 0.74
CTCFP49711 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.66■□□□□ 0.74
CTCFP49711 AC087499.5-201ENST00000452760 1342 ntBASIC19.66■□□□□ 0.74
CTCFP49711 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTCFP49711 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 AC104581.1-202ENST00000635932 2618 ntBASIC19.65■□□□□ 0.74
CTCFP49711 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.65■□□□□ 0.74
CTCFP49711 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC19.65■□□□□ 0.74
CTCFP49711 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.65■□□□□ 0.74
CTCFP49711 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC19.65■□□□□ 0.74
CTCFP49711 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CTCFP49711 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.65■□□□□ 0.74
CTCFP49711 AC104989.1-201ENST00000519711 778 ntBASIC19.65■□□□□ 0.74
CTCFP49711 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 NEU3-203ENST00000529024 581 ntTSL 3 BASIC19.65■□□□□ 0.74
CTCFP49711 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.65■□□□□ 0.74
CTCFP49711 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 AL009183.1-201ENST00000603760 355 ntBASIC19.65■□□□□ 0.74
CTCFP49711 AC004840.1-201ENST00000636359 365 ntBASIC19.65■□□□□ 0.74
CTCFP49711 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
CTCFP49711 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.65■□□□□ 0.74
CTCFP49711 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.65■□□□□ 0.74
CTCFP49711 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 AL031598.1-201ENST00000561511 1773 ntBASIC19.65■□□□□ 0.74
CTCFP49711 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.65■□□□□ 0.74
CTCFP49711 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CTCFP49711 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CTCFP49711 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTCFP49711 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CTCFP49711 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CTCFP49711 FZD10-202ENST00000539839 3282 ntBASIC19.64■□□□□ 0.74
CTCFP49711 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CTCFP49711 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.64■□□□□ 0.74
CTCFP49711 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CTCFP49711 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.64■□□□□ 0.74
CTCFP49711 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC19.64■□□□□ 0.73
CTCFP49711 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19.64■□□□□ 0.73
CTCFP49711 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 BRWD1P1-201ENST00000401091 371 ntBASIC19.64■□□□□ 0.73
CTCFP49711 BOLA2P3-201ENST00000404566 256 ntBASIC19.64■□□□□ 0.73
CTCFP49711 AC087163.2-201ENST00000457299 853 ntBASIC19.64■□□□□ 0.73
CTCFP49711 AC099548.2-209ENST00000480264 625 ntBASIC19.64■□□□□ 0.73
CTCFP49711 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTCFP49711 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.64■□□□□ 0.73
CTCFP49711 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CTCFP49711 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.64■□□□□ 0.73
CTCFP49711 AC007967.4-201ENST00000614700 386 ntBASIC19.64■□□□□ 0.73
CTCFP49711 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.64■□□□□ 0.73
CTCFP49711 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms