Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL4A5P29400 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
COL4A5P29400 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A5P29400 AL353705.2-201ENST00000428243 662 ntBASIC20.2■□□□□ 0.82
COL4A5P29400 DFFBP1-201ENST00000433250 979 ntBASIC20.2■□□□□ 0.82
COL4A5P29400 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A5P29400 KRT18P34-201ENST00000488218 1270 ntBASIC20.2■□□□□ 0.82
COL4A5P29400 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL4A5P29400 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A5P29400 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A5P29400 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL4A5P29400 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A5P29400 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A5P29400 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A5P29400 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A5P29400 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A5P29400 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A5P29400 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.19■□□□□ 0.82
COL4A5P29400 AP006294.1-201ENST00000415407 339 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.19■□□□□ 0.82
COL4A5P29400 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A5P29400 AL079307.3-201ENST00000556114 283 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 AL162274.1-201ENST00000617191 1098 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A5P29400 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 KRT8P49-201ENST00000604166 1432 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL4A5P29400 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A5P29400 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A5P29400 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL4A5P29400 AC098614.1-201ENST00000368528 745 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 RN7SL837P-201ENST00000463010 287 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A5P29400 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL4A5P29400 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL4A5P29400 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A5P29400 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A5P29400 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
COL4A5P29400 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A5P29400 AC105021.1-202ENST00000570572 669 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.19■□□□□ 0.82
COL4A5P29400 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 MIR6799-201ENST00000620297 69 ntBASIC20.19■□□□□ 0.82
COL4A5P29400 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A5P29400 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A5P29400 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A5P29400 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL4A5P29400 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A5P29400 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL4A5P29400 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A5P29400 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.82
COL4A5P29400 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.18■□□□□ 0.82
COL4A5P29400 SNX29P1-201ENST00000548357 1007 ntBASIC20.18■□□□□ 0.82
COL4A5P29400 MIR4259-201ENST00000584466 101 ntBASIC20.18■□□□□ 0.82
COL4A5P29400 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL4A5P29400 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.18■□□□□ 0.82
COL4A5P29400 AL033527.4-201ENST00000641026 673 ntBASIC20.18■□□□□ 0.82
COL4A5P29400 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A5P29400 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A5P29400 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A5P29400 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms