Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
MSH3P20585 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.02■□□□□ 0.31
MSH3P20585 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
MSH3P20585 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH3P20585 AC006504.4-201ENST00000592118 1568 ntBASIC17.02■□□□□ 0.31
MSH3P20585 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MSH3P20585 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
MSH3P20585 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH3P20585 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH3P20585 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MSH3P20585 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH3P20585 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 HLA-A-201ENST00000376802 1334 ntBASIC17.01■□□□□ 0.31
MSH3P20585 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 AL590787.1-201ENST00000568856 1315 ntBASIC17.01■□□□□ 0.31
MSH3P20585 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 GPR89P-201ENST00000407924 1495 ntBASIC17.01■□□□□ 0.31
MSH3P20585 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
MSH3P20585 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
MSH3P20585 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.01■□□□□ 0.31
MSH3P20585 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
MSH3P20585 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 SLC25A1P3-201ENST00000395415 828 ntBASIC17.01■□□□□ 0.31
MSH3P20585 ELK2BP-201ENST00000415014 1224 ntBASIC17.01■□□□□ 0.31
MSH3P20585 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH3P20585 AC092910.1-201ENST00000482027 1129 ntBASIC17.01■□□□□ 0.31
MSH3P20585 AC136632.2-201ENST00000512891 861 ntBASIC17.01■□□□□ 0.31
MSH3P20585 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH3P20585 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH3P20585 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.01■□□□□ 0.31
MSH3P20585 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
MSH3P20585 AL049840.3-201ENST00000602669 611 ntBASIC17.01■□□□□ 0.31
MSH3P20585 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.01■□□□□ 0.31
MSH3P20585 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
MSH3P20585 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MSH3P20585 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH3P20585 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MSH3P20585 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17■□□□□ 0.31
MSH3P20585 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17■□□□□ 0.31
MSH3P20585 KRT18P27-201ENST00000427733 1299 ntBASIC17■□□□□ 0.31
MSH3P20585 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17■□□□□ 0.31
MSH3P20585 FDX1P1-201ENST00000449115 551 ntBASIC17■□□□□ 0.31
MSH3P20585 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17■□□□□ 0.31
MSH3P20585 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17■□□□□ 0.31
MSH3P20585 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17■□□□□ 0.31
MSH3P20585 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17■□□□□ 0.31
MSH3P20585 AC012640.2-201ENST00000561606 901 ntBASIC17■□□□□ 0.31
MSH3P20585 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17■□□□□ 0.31
MSH3P20585 AL356488.2-201ENST00000602755 427 ntBASIC17■□□□□ 0.31
MSH3P20585 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 MIR7706-201ENST00000613747 67 ntBASIC17■□□□□ 0.31
MSH3P20585 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17■□□□□ 0.31
MSH3P20585 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17■□□□□ 0.31
MSH3P20585 AC005593.1-201ENST00000624894 515 ntBASIC17■□□□□ 0.31
MSH3P20585 PGM5P2-202ENST00000637225 1043 ntBASIC17■□□□□ 0.31
MSH3P20585 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17■□□□□ 0.31
MSH3P20585 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17■□□□□ 0.31
MSH3P20585 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
MSH3P20585 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH3P20585 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 AP002414.3-201ENST00000589352 1468 ntBASIC16.99■□□□□ 0.31
MSH3P20585 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms