Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
MT-ND1P03886 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.17■□□□□ 0.18
MT-ND1P03886 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.17■□□□□ 0.18
MT-ND1P03886 AL513523.2-202ENST00000427283 2040 ntBASIC16.17■□□□□ 0.18
MT-ND1P03886 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.17■□□□□ 0.18
MT-ND1P03886 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 AC010460.3-201ENST00000511359 1579 ntBASIC16.17■□□□□ 0.18
MT-ND1P03886 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MT-ND1P03886 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
MT-ND1P03886 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.17■□□□□ 0.18
MT-ND1P03886 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.16■□□□□ 0.18
MT-ND1P03886 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.16■□□□□ 0.18
MT-ND1P03886 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.16■□□□□ 0.18
MT-ND1P03886 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.16■□□□□ 0.18
MT-ND1P03886 AC117947.1-201ENST00000427448 529 ntBASIC16.16■□□□□ 0.18
MT-ND1P03886 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.16■□□□□ 0.18
MT-ND1P03886 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.16■□□□□ 0.18
MT-ND1P03886 AC002558.1-201ENST00000488906 803 ntBASIC16.16■□□□□ 0.18
MT-ND1P03886 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
MT-ND1P03886 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.16■□□□□ 0.18
MT-ND1P03886 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.16■□□□□ 0.18
MT-ND1P03886 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
MT-ND1P03886 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.16■□□□□ 0.18
MT-ND1P03886 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.16■□□□□ 0.18
MT-ND1P03886 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.16■□□□□ 0.18
MT-ND1P03886 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.16■□□□□ 0.18
MT-ND1P03886 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MT-ND1P03886 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.15■□□□□ 0.18
MT-ND1P03886 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
MT-ND1P03886 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.15■□□□□ 0.18
MT-ND1P03886 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.15■□□□□ 0.18
MT-ND1P03886 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 AC092597.1-201ENST00000487352 616 ntBASIC16.15■□□□□ 0.18
MT-ND1P03886 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.15■□□□□ 0.18
MT-ND1P03886 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.15■□□□□ 0.18
MT-ND1P03886 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
MT-ND1P03886 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.15■□□□□ 0.18
MT-ND1P03886 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.15■□□□□ 0.18
MT-ND1P03886 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MT-ND1P03886 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
MT-ND1P03886 AC103702.1-201ENST00000548801 2630 ntBASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms