Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.05■□□□□ 0
LMX1BO60663 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1BO60663 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.05■□□□□ 0
LMX1BO60663 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.05■□□□□ 0
LMX1BO60663 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1BO60663 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
LMX1BO60663 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
LMX1BO60663 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1BO60663 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1BO60663 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1BO60663 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1BO60663 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
LMX1BO60663 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.05■□□□□ -0
LMX1BO60663 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.05■□□□□ -0
LMX1BO60663 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.05■□□□□ -0
LMX1BO60663 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.05■□□□□ -0
LMX1BO60663 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.05■□□□□ -0
LMX1BO60663 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.05■□□□□ -0
LMX1BO60663 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.05■□□□□ -0
LMX1BO60663 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.05■□□□□ -0
LMX1BO60663 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.05■□□□□ -0
LMX1BO60663 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1BO60663 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.04■□□□□ -0
LMX1BO60663 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.04■□□□□ -0
LMX1BO60663 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
LMX1BO60663 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.04■□□□□ -0
LMX1BO60663 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.04■□□□□ -0
LMX1BO60663 AC092865.5-201ENST00000545435 363 ntBASIC15.04■□□□□ -0
LMX1BO60663 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 MIR5100-201ENST00000579544 119 ntBASIC15.04■□□□□ -0
LMX1BO60663 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.04■□□□□ -0
LMX1BO60663 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
LMX1BO60663 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.04■□□□□ -0
LMX1BO60663 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
LMX1BO60663 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1BO60663 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.04■□□□□ -0
LMX1BO60663 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.03■□□□□ -0
LMX1BO60663 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
LMX1BO60663 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.03■□□□□ -0
LMX1BO60663 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.03■□□□□ -0
LMX1BO60663 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms