Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HPS4Q9NQG7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AL139400.1-201ENST00000366220 510 ntBASIC17.69■□□□□ 0.42
HPS4Q9NQG7 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AL139327.4-201ENST00000612362 153 ntBASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AL513210.1-201ENST00000629608 234 ntBASIC17.69■□□□□ 0.42
HPS4Q9NQG7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HPS4Q9NQG7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 TSEN15P1-201ENST00000423257 515 ntBASIC17.68■□□□□ 0.42
HPS4Q9NQG7 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 AC006116.8-202ENST00000587620 1550 ntBASIC17.68■□□□□ 0.42
HPS4Q9NQG7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 AC106028.4-201ENST00000614509 607 ntBASIC17.68■□□□□ 0.42
HPS4Q9NQG7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HPS4Q9NQG7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 AC004461.1-201ENST00000412461 403 ntBASIC17.67■□□□□ 0.42
HPS4Q9NQG7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 AC087163.2-201ENST00000457299 853 ntBASIC17.67■□□□□ 0.42
HPS4Q9NQG7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HPS4Q9NQG7 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms