Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 KRT18P28-201ENST00000453838 1332 ntBASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 AC097637.2-201ENST00000624096 1997 ntBASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 LINC00982-205ENST00000420957 435 ntBASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 AL596442.2-201ENST00000610240 980 ntBASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RPAP1Q9BWH6 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
RPAP1Q9BWH6 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
RPAP1Q9BWH6 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 RFPL4AP1-201ENST00000530883 850 ntBASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 AC096734.2-201ENST00000562054 433 ntBASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 OR7E47P-204ENST00000575924 449 ntBASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 GGTLC5P-201ENST00000617623 998 ntBASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.7■□□□□ 0.9
RPAP1Q9BWH6 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 AC060834.1-201ENST00000443027 2032 ntBASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 RHOQP3-201ENST00000437982 621 ntBASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 SNHG9-202ENST00000564014 471 ntBASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RPAP1Q9BWH6 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 CNN2P11-201ENST00000429351 262 ntBASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 CYMP-203ENST00000474680 1263 ntBASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RPAP1Q9BWH6 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RPAP1Q9BWH6 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms