Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB4Q8WW32 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 FAM58DP-201ENST00000428076 619 ntBASIC17.09■□□□□ 0.33
HMGB4Q8WW32 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 AC069262.1-201ENST00000539058 672 ntBASIC17.09■□□□□ 0.33
HMGB4Q8WW32 AL390955.2-201ENST00000603032 514 ntBASIC17.09■□□□□ 0.33
HMGB4Q8WW32 AL161645.1-201ENST00000622716 1255 ntBASIC17.09■□□□□ 0.33
HMGB4Q8WW32 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HMGB4Q8WW32 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB4Q8WW32 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 AKAP8P1-201ENST00000434743 1349 ntBASIC17.08■□□□□ 0.32
HMGB4Q8WW32 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 HMGA1P7-201ENST00000406908 502 ntBASIC17.08■□□□□ 0.32
HMGB4Q8WW32 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 AC069335.1-201ENST00000489972 472 ntBASIC17.08■□□□□ 0.32
HMGB4Q8WW32 RNA5SP421-201ENST00000516864 134 ntBASIC17.08■□□□□ 0.32
HMGB4Q8WW32 IGHV3-62-201ENST00000520057 340 ntBASIC17.08■□□□□ 0.32
HMGB4Q8WW32 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 AC005412.3-201ENST00000580309 715 ntBASIC17.08■□□□□ 0.32
HMGB4Q8WW32 AC015911.4-201ENST00000588022 1070 ntBASIC17.08■□□□□ 0.32
HMGB4Q8WW32 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HMGB4Q8WW32 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms