Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 PC-208ENST00000529047 1607 ntTSL 3 BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
HIST1H1AQ02539 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 HYMAI-201ENST00000635591 3347 ntBASIC13.16□□□□□ -0.3
HIST1H1AQ02539 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AL645929.1-201ENST00000420084 975 ntBASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AC063952.2-201ENST00000498792 1227 ntBASIC13.16□□□□□ -0.3
HIST1H1AQ02539 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 RN7SL850P-201ENST00000579959 291 ntBASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AC083849.1-201ENST00000615227 514 ntBASIC13.16□□□□□ -0.3
HIST1H1AQ02539 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 DFFB-212ENST00000625756 649 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 WDR6-223ENST00000627177 207 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 AC105020.1-201ENST00000435356 2205 ntBASIC13.16□□□□□ -0.3
HIST1H1AQ02539 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIST1H1AQ02539 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 LYSMD4-203ENST00000378904 2122 ntBASIC13.15□□□□□ -0.3
HIST1H1AQ02539 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 LY6E-213ENST00000522528 606 ntTSL 3 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 MED25-212ENST00000618715 1467 ntTSL 5 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIST1H1AQ02539 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms