Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC15.12■□□□□ 0.01
SOX2P48431 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX2P48431 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
SOX2P48431 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
SOX2P48431 AC097374.2-201ENST00000618617 1306 ntBASIC15.12■□□□□ 0.01
SOX2P48431 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
SOX2P48431 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX2P48431 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
SOX2P48431 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SOX2P48431 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX2P48431 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.11■□□□□ 0.01
SOX2P48431 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SOX2P48431 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.11■□□□□ 0.01
SOX2P48431 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 AC006449.5-201ENST00000610658 2098 ntBASIC15.11■□□□□ 0.01
SOX2P48431 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX2P48431 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX2P48431 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX2P48431 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX2P48431 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.1■□□□□ 0.01
SOX2P48431 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.1■□□□□ 0.01
SOX2P48431 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX2P48431 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SOX2P48431 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 AC087499.1-201ENST00000418141 1075 ntBASIC15.1■□□□□ 0.01
SOX2P48431 AC007967.3-201ENST00000434308 558 ntBASIC15.1■□□□□ 0.01
SOX2P48431 YBX1P2-201ENST00000489612 999 ntBASIC15.1■□□□□ 0.01
SOX2P48431 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.1■□□□□ 0.01
SOX2P48431 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.1■□□□□ 0.01
SOX2P48431 AL390719.2-201ENST00000606993 987 ntBASIC15.1■□□□□ 0.01
SOX2P48431 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX2P48431 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX2P48431 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX2P48431 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms