Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.04□□□□□ -0.16
CDX1P47902 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC14.04□□□□□ -0.16
CDX1P47902 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CDX1P47902 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 AC009154.2-201ENST00000621177 724 ntBASIC14.04□□□□□ -0.16
CDX1P47902 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CDX1P47902 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.04□□□□□ -0.16
CDX1P47902 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.04□□□□□ -0.16
CDX1P47902 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
CDX1P47902 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.04□□□□□ -0.16
CDX1P47902 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 AC099343.3-201ENST00000605834 2503 ntBASIC14.04□□□□□ -0.16
CDX1P47902 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
CDX1P47902 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CDX1P47902 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.04□□□□□ -0.16
CDX1P47902 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDX1P47902 LYSMD4-203ENST00000378904 2122 ntBASIC14.03□□□□□ -0.16
CDX1P47902 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CDX1P47902 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.03□□□□□ -0.16
CDX1P47902 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.03□□□□□ -0.16
CDX1P47902 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.03□□□□□ -0.16
CDX1P47902 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.03□□□□□ -0.16
CDX1P47902 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 AL353801.3-201ENST00000609898 542 ntBASIC14.03□□□□□ -0.16
CDX1P47902 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 AL691432.3-201ENST00000621860 400 ntBASIC14.03□□□□□ -0.16
CDX1P47902 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.03□□□□□ -0.16
CDX1P47902 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.03□□□□□ -0.16
CDX1P47902 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.03□□□□□ -0.16
CDX1P47902 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
CDX1P47902 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.03□□□□□ -0.16
CDX1P47902 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CDX1P47902 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.03□□□□□ -0.16
CDX1P47902 AL603756.1-201ENST00000606511 2163 ntBASIC14.03□□□□□ -0.16
CDX1P47902 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.03□□□□□ -0.16
CDX1P47902 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.03□□□□□ -0.16
CDX1P47902 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDX1P47902 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CDX1P47902 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CDX1P47902 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.02□□□□□ -0.16
CDX1P47902 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CDX1P47902 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CDX1P47902 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.02□□□□□ -0.16
CDX1P47902 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDX1P47902 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.02□□□□□ -0.16
CDX1P47902 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms