Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 KRT18P66-201ENST00000452970 1269 ntBASIC17.55■□□□□ 0.4
COL6A3P12111 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A3P12111 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.55■□□□□ 0.4
COL6A3P12111 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A3P12111 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A3P12111 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.54■□□□□ 0.4
COL6A3P12111 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A3P12111 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A3P12111 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.54■□□□□ 0.4
COL6A3P12111 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A3P12111 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.54■□□□□ 0.4
COL6A3P12111 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.54■□□□□ 0.4
COL6A3P12111 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL6A3P12111 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.54■□□□□ 0.4
COL6A3P12111 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A3P12111 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A3P12111 AL512361.1-201ENST00000554200 418 ntBASIC17.54■□□□□ 0.4
COL6A3P12111 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A3P12111 AL079307.3-201ENST00000556114 283 ntBASIC17.54■□□□□ 0.4
COL6A3P12111 AC073389.1-201ENST00000595595 795 ntBASIC17.54■□□□□ 0.4
COL6A3P12111 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.54■□□□□ 0.4
COL6A3P12111 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
COL6A3P12111 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A3P12111 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 AC138028.6-201ENST00000616106 1482 ntBASIC17.53■□□□□ 0.4
COL6A3P12111 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.53■□□□□ 0.4
COL6A3P12111 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.53■□□□□ 0.4
COL6A3P12111 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.53■□□□□ 0.4
COL6A3P12111 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.53■□□□□ 0.4
COL6A3P12111 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 AC105021.1-202ENST00000570572 669 ntBASIC17.53■□□□□ 0.4
COL6A3P12111 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC17.53■□□□□ 0.4
COL6A3P12111 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL6A3P12111 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A3P12111 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.52■□□□□ 0.4
COL6A3P12111 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 AC010328.2-201ENST00000597698 1111 ntBASIC17.52■□□□□ 0.4
COL6A3P12111 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.52■□□□□ 0.4
COL6A3P12111 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.52■□□□□ 0.4
COL6A3P12111 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
COL6A3P12111 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
COL6A3P12111 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A3P12111 BCRP2-202ENST00000447763 634 ntBASIC17.52■□□□□ 0.4
COL6A3P12111 BCRP6-201ENST00000510112 632 ntBASIC17.52■□□□□ 0.4
COL6A3P12111 BCRP7-201ENST00000511549 544 ntBASIC17.52■□□□□ 0.4
COL6A3P12111 AL031055.1-201ENST00000606362 631 ntBASIC17.52■□□□□ 0.4
COL6A3P12111 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
COL6A3P12111 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A3P12111 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.52■□□□□ 0.39
COL6A3P12111 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A3P12111 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A3P12111 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A3P12111 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.52■□□□□ 0.39
COL6A3P12111 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.52■□□□□ 0.39
COL6A3P12111 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
COL6A3P12111 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.52■□□□□ 0.39
COL6A3P12111 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.52■□□□□ 0.39
COL6A3P12111 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A3P12111 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.52■□□□□ 0.39
COL6A3P12111 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
COL6A3P12111 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A3P12111 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A3P12111 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL6A3P12111 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A3P12111 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms