Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SLC9A3P2-201ENST00000447821 2021 ntBASIC21.3■■□□□ 1
CACNA1FO60840 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 AC105020.1-201ENST00000435356 2205 ntBASIC21.29■■□□□ 1
CACNA1FO60840 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.29■■□□□ 1
CACNA1FO60840 KRT8P48-201ENST00000515599 1220 ntBASIC21.29■■□□□ 1
CACNA1FO60840 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC21.29■■□□□ 1
CACNA1FO60840 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.29■■□□□ 1
CACNA1FO60840 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.29■■□□□ 1
CACNA1FO60840 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC21.29■■□□□ 1
CACNA1FO60840 RPS15-207ENST00000591032 550 ntTSL 3 BASIC21.29■■□□□ 1
CACNA1FO60840 RPS15-212ENST00000593052 629 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CACNA1FO60840 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
CACNA1FO60840 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1FO60840 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.29■■□□□ 1
CACNA1FO60840 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.28■■□□□ 1
CACNA1FO60840 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC21.28■■□□□ 1
CACNA1FO60840 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC21.28■■□□□ 1
CACNA1FO60840 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC21.28■■□□□ 1
CACNA1FO60840 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.28■■□□□ 1
CACNA1FO60840 AC134684.3-201ENST00000641758 218 ntBASIC21.28■■□□□ 1
CACNA1FO60840 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.28■■□□□ 1
CACNA1FO60840 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.28■■□□□ 1
CACNA1FO60840 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.28■■□□□ 1
CACNA1FO60840 AC002056.1-201ENST00000395613 760 ntBASIC21.28■■□□□ 1
CACNA1FO60840 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 TSEN15P1-201ENST00000423257 515 ntBASIC21.28■■□□□ 1
CACNA1FO60840 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.28■■□□□ 1
CACNA1FO60840 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC21.28■■□□□ 1
CACNA1FO60840 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.28■■□□□ 1
CACNA1FO60840 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 AL671710.1-201ENST00000610245 2349 ntBASIC21.28■■□□□ 1
CACNA1FO60840 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CACNA1FO60840 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC21.28■■□□□ 1
CACNA1FO60840 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.28■■□□□ 1
CACNA1FO60840 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1FO60840 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC21.28■■□□□ 1
CACNA1FO60840 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CACNA1FO60840 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CACNA1FO60840 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC21.27■■□□□ 1
CACNA1FO60840 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CACNA1FO60840 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.27■■□□□ 1
CACNA1FO60840 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 AL627223.1-201ENST00000416693 442 ntBASIC21.27■■□□□ 1
CACNA1FO60840 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.27■■□□□ 1
CACNA1FO60840 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CACNA1FO60840 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.27■■□□□ 1
CACNA1FO60840 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.27■■□□□ 1
CACNA1FO60840 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CACNA1FO60840 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1FO60840 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CACNA1FO60840 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
CACNA1FO60840 AL031731.1-201ENST00000642131 2094 ntBASIC21.27■□□□□ 0.99
CACNA1FO60840 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC21.27■□□□□ 0.99
CACNA1FO60840 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CACNA1FO60840 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CACNA1FO60840 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CACNA1FO60840 AC004461.1-201ENST00000412461 403 ntBASIC21.27■□□□□ 0.99
CACNA1FO60840 AL355306.1-201ENST00000415580 579 ntBASIC21.27■□□□□ 0.99
CACNA1FO60840 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC21.27■□□□□ 0.99
CACNA1FO60840 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC21.27■□□□□ 0.99
CACNA1FO60840 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1FO60840 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms