Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.69■□□□□ 0.26
HDAC3O15379 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC3O15379 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.68■□□□□ 0.26
HDAC3O15379 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.68■□□□□ 0.26
HDAC3O15379 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.68■□□□□ 0.26
HDAC3O15379 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.68■□□□□ 0.26
HDAC3O15379 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 AC087499.1-201ENST00000418141 1075 ntBASIC16.68■□□□□ 0.26
HDAC3O15379 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.68■□□□□ 0.26
HDAC3O15379 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 KRT18P38-201ENST00000449496 1282 ntBASIC16.68■□□□□ 0.26
HDAC3O15379 HOMER2P1-201ENST00000455653 964 ntBASIC16.68■□□□□ 0.26
HDAC3O15379 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 STK19B-204ENST00000512515 211 ntBASIC16.68■□□□□ 0.26
HDAC3O15379 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.68■□□□□ 0.26
HDAC3O15379 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.68■□□□□ 0.26
HDAC3O15379 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.68■□□□□ 0.26
HDAC3O15379 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
HDAC3O15379 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.68■□□□□ 0.26
HDAC3O15379 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
HDAC3O15379 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC3O15379 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC3O15379 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
HDAC3O15379 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.67■□□□□ 0.26
HDAC3O15379 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.67■□□□□ 0.26
HDAC3O15379 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.67■□□□□ 0.26
HDAC3O15379 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.67■□□□□ 0.26
HDAC3O15379 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.67■□□□□ 0.26
HDAC3O15379 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.67■□□□□ 0.26
HDAC3O15379 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HDAC3O15379 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 HYMAI.1-201ENST00000620949 238 ntBASIC16.67■□□□□ 0.26
HDAC3O15379 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
HDAC3O15379 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.67■□□□□ 0.26
HDAC3O15379 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HDAC3O15379 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HDAC3O15379 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HDAC3O15379 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.66■□□□□ 0.26
HDAC3O15379 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HDAC3O15379 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.66■□□□□ 0.26
HDAC3O15379 AC117947.1-201ENST00000427448 529 ntBASIC16.66■□□□□ 0.26
HDAC3O15379 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.66■□□□□ 0.26
HDAC3O15379 AC112907.2-201ENST00000448639 330 ntBASIC16.66■□□□□ 0.26
HDAC3O15379 RN7SL606P-201ENST00000472779 293 ntBASIC16.66■□□□□ 0.26
HDAC3O15379 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms