Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 AC132008.2-207ENST00000454517 770 ntBASIC17.71■□□□□ 0.43
PCDH9Q9HC56 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.71■□□□□ 0.42
PCDH9Q9HC56 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
PCDH9Q9HC56 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PCDH9Q9HC56 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
PCDH9Q9HC56 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.71■□□□□ 0.42
PCDH9Q9HC56 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PCDH9Q9HC56 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
PCDH9Q9HC56 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 GPR89P-201ENST00000407924 1495 ntBASIC17.7■□□□□ 0.42
PCDH9Q9HC56 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 KLF4P1-201ENST00000412782 1185 ntBASIC17.7■□□□□ 0.42
PCDH9Q9HC56 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 DUSP5P1-201ENST00000441325 1139 ntBASIC17.7■□□□□ 0.42
PCDH9Q9HC56 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 ABCD1P5-201ENST00000445663 754 ntBASIC17.7■□□□□ 0.42
PCDH9Q9HC56 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH9Q9HC56 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 LINC01711-201ENST00000598340 967 ntBASIC17.69■□□□□ 0.42
PCDH9Q9HC56 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms