Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.52■□□□□ 0.39
TRIM56Q9BRZ2 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 AC132938.5-201ENST00000624980 1813 ntBASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 FAM220CP-201ENST00000395253 831 ntBASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 UPK3BP1-201ENST00000428678 509 ntBASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 AL121672.3-201ENST00000608644 468 ntBASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
TRIM56Q9BRZ2 AC018695.7-201ENST00000624587 2492 ntBASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 AC078925.2-201ENST00000624013 1973 ntBASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 AP000550.4-202ENST00000639755 178 ntBASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 AL135999.2-201ENST00000622438 1686 ntBASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 AC233702.3-201ENST00000578656 1387 ntBASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 AL353593.2-201ENST00000602529 1483 ntBASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM56Q9BRZ2 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 KRT18P1-202ENST00000452408 1331 ntBASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 AL139384.1-201ENST00000612143 3047 ntBASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 MYCLP1-201ENST00000372451 1075 ntBASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 PCED1CP-201ENST00000419887 785 ntBASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 TSSC2-201ENST00000450217 709 ntBASIC17.49■□□□□ 0.39
TRIM56Q9BRZ2 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms