Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.7■□□□□ 0.26
LYSMD4Q5XG99 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LYSMD4Q5XG99 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
LYSMD4Q5XG99 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 MIR346-201ENST00000362234 95 ntBASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 HLA-J-202ENST00000469281 1241 ntBASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 SERBP1P5-201ENST00000510079 1181 ntBASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 MIR3909-201ENST00000579518 119 ntBASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 AC091167.2-201ENST00000579581 588 ntBASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 AP001350.2-201ENST00000625104 1094 ntBASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LYSMD4Q5XG99 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 AC009118.2-201ENST00000613275 655 ntBASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 AC073592.8-201ENST00000624126 511 ntBASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 AC016027.1-202ENST00000607927 1699 ntBASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LYSMD4Q5XG99 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 PIN1P1-201ENST00000412108 996 ntBASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 AC004890.2-204ENST00000481968 304 ntBASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 AC027369.6-201ENST00000525520 931 ntBASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LYSMD4Q5XG99 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 TOP3BP1-201ENST00000420768 1380 ntBASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LYSMD4Q5XG99 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms