Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.43■□□□□ 0.38
USP39Q53GS9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.43■□□□□ 0.38
USP39Q53GS9 AC093028.1-201ENST00000622998 982 ntBASIC17.43■□□□□ 0.38
USP39Q53GS9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.43■□□□□ 0.38
USP39Q53GS9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
USP39Q53GS9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.42■□□□□ 0.38
USP39Q53GS9 AC009336.1-201ENST00000608941 1553 ntBASIC17.42■□□□□ 0.38
USP39Q53GS9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 LINC00982-205ENST00000420957 435 ntBASIC17.42■□□□□ 0.38
USP39Q53GS9 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.42■□□□□ 0.38
USP39Q53GS9 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.42■□□□□ 0.38
USP39Q53GS9 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.42■□□□□ 0.38
USP39Q53GS9 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.42■□□□□ 0.38
USP39Q53GS9 AC091812.2-201ENST00000619081 385 ntBASIC17.42■□□□□ 0.38
USP39Q53GS9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
USP39Q53GS9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
USP39Q53GS9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
USP39Q53GS9 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
USP39Q53GS9 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP39Q53GS9 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USP39Q53GS9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 PI4KAP1-204ENST00000612579 1703 ntBASIC17.41■□□□□ 0.38
USP39Q53GS9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 AC006116.8-202ENST00000587620 1550 ntBASIC17.41■□□□□ 0.38
USP39Q53GS9 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 DDX43P3-201ENST00000441064 443 ntBASIC17.41■□□□□ 0.38
USP39Q53GS9 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.41■□□□□ 0.38
USP39Q53GS9 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.41■□□□□ 0.38
USP39Q53GS9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
USP39Q53GS9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.41■□□□□ 0.38
USP39Q53GS9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USP39Q53GS9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP39Q53GS9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.41■□□□□ 0.38
USP39Q53GS9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 FZD10-202ENST00000539839 3282 ntBASIC17.4■□□□□ 0.38
USP39Q53GS9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 AC012317.2-201ENST00000623305 2251 ntBASIC17.4■□□□□ 0.38
USP39Q53GS9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.4■□□□□ 0.38
USP39Q53GS9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 MYCLP1-201ENST00000372451 1075 ntBASIC17.4■□□□□ 0.38
USP39Q53GS9 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.4■□□□□ 0.38
USP39Q53GS9 OR7E47P-204ENST00000575924 449 ntBASIC17.4■□□□□ 0.38
USP39Q53GS9 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 KRT18P55-202ENST00000578578 1546 ntBASIC17.4■□□□□ 0.38
USP39Q53GS9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 AC020916.1-201ENST00000587762 1774 ntBASIC17.4■□□□□ 0.38
USP39Q53GS9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms