Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.26■□□□□ 0.19
LIM2P55344 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 RPS2P28-201ENST00000314255 741 ntBASIC16.26■□□□□ 0.19
LIM2P55344 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.26■□□□□ 0.19
LIM2P55344 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.26■□□□□ 0.19
LIM2P55344 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.26■□□□□ 0.19
LIM2P55344 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.26■□□□□ 0.19
LIM2P55344 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.26■□□□□ 0.19
LIM2P55344 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.26■□□□□ 0.19
LIM2P55344 SLC25A6P4-201ENST00000586535 553 ntBASIC16.26■□□□□ 0.19
LIM2P55344 AC008735.5-201ENST00000623544 497 ntBASIC16.26■□□□□ 0.19
LIM2P55344 FAM215A-202ENST00000632077 792 ntBASIC16.26■□□□□ 0.19
LIM2P55344 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LIM2P55344 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LIM2P55344 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LIM2P55344 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.26■□□□□ 0.19
LIM2P55344 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LIM2P55344 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.26■□□□□ 0.19
LIM2P55344 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
LIM2P55344 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
LIM2P55344 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.25■□□□□ 0.19
LIM2P55344 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
LIM2P55344 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.25■□□□□ 0.19
LIM2P55344 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 GPR89P-201ENST00000407924 1495 ntBASIC16.25■□□□□ 0.19
LIM2P55344 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.25■□□□□ 0.19
LIM2P55344 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.25■□□□□ 0.19
LIM2P55344 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.25■□□□□ 0.19
LIM2P55344 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 AL031284.1-201ENST00000419297 478 ntBASIC16.25■□□□□ 0.19
LIM2P55344 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.25■□□□□ 0.19
LIM2P55344 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
LIM2P55344 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.25■□□□□ 0.19
LIM2P55344 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.25■□□□□ 0.19
LIM2P55344 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.25■□□□□ 0.19
LIM2P55344 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.25■□□□□ 0.19
LIM2P55344 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
LIM2P55344 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.25■□□□□ 0.19
LIM2P55344 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
LIM2P55344 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 AGGF1P2-201ENST00000426656 2106 ntBASIC16.25■□□□□ 0.19
LIM2P55344 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.25■□□□□ 0.19
LIM2P55344 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LIM2P55344 AC006504.4-201ENST00000592118 1568 ntBASIC16.25■□□□□ 0.19
LIM2P55344 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIM2P55344 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
LIM2P55344 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LIM2P55344 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
LIM2P55344 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
LIM2P55344 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.24■□□□□ 0.19
LIM2P55344 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LIM2P55344 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LIM2P55344 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 ELK2BP-201ENST00000415014 1224 ntBASIC16.24■□□□□ 0.19
LIM2P55344 KRT18P27-201ENST00000427733 1299 ntBASIC16.24■□□□□ 0.19
LIM2P55344 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
LIM2P55344 AL662844.1-201ENST00000546340 181 ntBASIC16.24■□□□□ 0.19
LIM2P55344 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.24■□□□□ 0.19
LIM2P55344 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.24■□□□□ 0.19
LIM2P55344 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.24■□□□□ 0.19
LIM2P55344 AC012640.2-201ENST00000561606 901 ntBASIC16.24■□□□□ 0.19
LIM2P55344 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.24■□□□□ 0.19
LIM2P55344 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.24■□□□□ 0.19
LIM2P55344 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.24■□□□□ 0.19
LIM2P55344 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIM2P55344 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms