Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 HLA-A-201ENST00000376802 1334 ntBASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS54Q9P1Q0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AP002414.1-201ENST00000391405 1147 ntBASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AC092910.1-201ENST00000482027 1129 ntBASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AC136632.2-201ENST00000512891 861 ntBASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AC124947.2-201ENST00000547118 1133 ntBASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AP001005.1-201ENST00000571755 1248 ntBASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AL356488.2-201ENST00000602755 427 ntBASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 AC005915.1-201ENST00000624912 2018 ntBASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
VPS54Q9P1Q0 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 FDX1P1-201ENST00000449115 551 ntBASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 RPS15P9-201ENST00000494093 319 ntBASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 AL662844.1-201ENST00000546340 181 ntBASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms