Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.24■□□□□ 0.83
NKX2-3Q8TAU0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.23■□□□□ 0.83
NKX2-3Q8TAU0 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 AP002414.1-201ENST00000391405 1147 ntBASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 AL513190.1-201ENST00000621254 727 ntBASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NKX2-3Q8TAU0 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 ELL2P1-201ENST00000413990 1906 ntBASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 BCRP1-201ENST00000444246 691 ntBASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NKX2-3Q8TAU0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.83
NKX2-3Q8TAU0 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 CEND1P1-201ENST00000451006 455 ntBASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NKX2-3Q8TAU0 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms