Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.47■□□□□ 0.39
SLC44A3Q8N4M1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 FLJ13224-201ENST00000313737 1514 ntBASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 WASH6P-202ENST00000359512 1437 ntBASIC17.46■□□□□ 0.39
SLC44A3Q8N4M1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SLC44A3Q8N4M1 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.46■□□□□ 0.38
SLC44A3Q8N4M1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 MIR346-201ENST00000362234 95 ntBASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 AC241585.1-201ENST00000433527 519 ntBASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 AC004890.2-204ENST00000481968 304 ntBASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 MEIS3P1-201ENST00000495167 958 ntBASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 SERBP1P5-201ENST00000510079 1181 ntBASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 AC008267.7-201ENST00000624570 1194 ntBASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SLC44A3Q8N4M1 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 AP000842.3-202ENST00000569238 1080 ntBASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 MIR4453-201ENST00000584019 89 ntBASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 AL662799.1-202ENST00000614205 422 ntBASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 AC025048.6-201ENST00000634326 1161 ntBASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.44■□□□□ 0.38
SLC44A3Q8N4M1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms