Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC20.06■□□□□ 0.8
MRE11P49959 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MRE11P49959 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.06■□□□□ 0.8
MRE11P49959 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MRE11P49959 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MRE11P49959 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.06■□□□□ 0.8
MRE11P49959 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
MRE11P49959 AL024508.2-201ENST00000607749 1894 ntBASIC20.05■□□□□ 0.8
MRE11P49959 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MRE11P49959 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.05■□□□□ 0.8
MRE11P49959 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.05■□□□□ 0.8
MRE11P49959 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.05■□□□□ 0.8
MRE11P49959 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 AL671277.2-201ENST00000458060 996 ntBASIC20.05■□□□□ 0.8
MRE11P49959 AC092183.1-201ENST00000469884 875 ntBASIC20.05■□□□□ 0.8
MRE11P49959 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.05■□□□□ 0.8
MRE11P49959 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.05■□□□□ 0.8
MRE11P49959 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.05■□□□□ 0.8
MRE11P49959 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC20.05■□□□□ 0.8
MRE11P49959 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.05■□□□□ 0.8
MRE11P49959 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.05■□□□□ 0.8
MRE11P49959 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MRE11P49959 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
MRE11P49959 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
MRE11P49959 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
MRE11P49959 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
MRE11P49959 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 KSR1P1-201ENST00000446298 240 ntBASIC20.04■□□□□ 0.8
MRE11P49959 COX11P1-201ENST00000489116 835 ntBASIC20.04■□□□□ 0.8
MRE11P49959 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.04■□□□□ 0.8
MRE11P49959 AC008622.2-201ENST00000617006 1229 ntBASIC20.04■□□□□ 0.8
MRE11P49959 AL138966.2-201ENST00000621997 464 ntBASIC20.04■□□□□ 0.8
MRE11P49959 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.04■□□□□ 0.8
MRE11P49959 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
MRE11P49959 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 DBET-201ENST00000630918 3363 ntBASIC20.04■□□□□ 0.8
MRE11P49959 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.04■□□□□ 0.8
MRE11P49959 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MRE11P49959 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
MRE11P49959 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.03■□□□□ 0.8
MRE11P49959 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC20.03■□□□□ 0.8
MRE11P49959 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 AC099063.4-201ENST00000641099 1602 ntBASIC20.03■□□□□ 0.8
MRE11P49959 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC20.03■□□□□ 0.8
MRE11P49959 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.03■□□□□ 0.8
MRE11P49959 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.03■□□□□ 0.8
MRE11P49959 KRT18P13-201ENST00000400056 1290 ntBASIC20.03■□□□□ 0.8
MRE11P49959 HMGA1P5-201ENST00000412453 271 ntBASIC20.03■□□□□ 0.8
MRE11P49959 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.03■□□□□ 0.8
MRE11P49959 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.03■□□□□ 0.8
MRE11P49959 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MRE11P49959 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.03■□□□□ 0.8
MRE11P49959 CKBP1-201ENST00000565489 1086 ntBASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms