Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SHOX2O60902 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.19■□□□□ 0.34
SHOX2O60902 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
SHOX2O60902 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHOX2O60902 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 SNX18-202ENST00000343017 3140 ntBASIC17.18■□□□□ 0.34
SHOX2O60902 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
SHOX2O60902 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.18■□□□□ 0.34
SHOX2O60902 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.18■□□□□ 0.34
SHOX2O60902 HLA-J-202ENST00000469281 1241 ntBASIC17.18■□□□□ 0.34
SHOX2O60902 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.18■□□□□ 0.34
SHOX2O60902 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 CR769767.2-201ENST00000622735 460 ntBASIC17.18■□□□□ 0.34
SHOX2O60902 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SHOX2O60902 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SHOX2O60902 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.18■□□□□ 0.34
SHOX2O60902 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
SHOX2O60902 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.17■□□□□ 0.34
SHOX2O60902 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.17■□□□□ 0.34
SHOX2O60902 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.17■□□□□ 0.34
SHOX2O60902 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SHOX2O60902 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.17■□□□□ 0.34
SHOX2O60902 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
SHOX2O60902 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.17■□□□□ 0.34
SHOX2O60902 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.17■□□□□ 0.34
SHOX2O60902 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.17■□□□□ 0.34
SHOX2O60902 MESTP1-201ENST00000404287 994 ntBASIC17.17■□□□□ 0.34
SHOX2O60902 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.17■□□□□ 0.34
SHOX2O60902 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.17■□□□□ 0.34
SHOX2O60902 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.17■□□□□ 0.34
SHOX2O60902 C1QBPP2-201ENST00000528754 825 ntBASIC17.17■□□□□ 0.34
SHOX2O60902 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
SHOX2O60902 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SHOX2O60902 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SHOX2O60902 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SHOX2O60902 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SHOX2O60902 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.16■□□□□ 0.34
SHOX2O60902 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
SHOX2O60902 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.16■□□□□ 0.34
SHOX2O60902 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
SHOX2O60902 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.16■□□□□ 0.34
SHOX2O60902 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.16■□□□□ 0.34
SHOX2O60902 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.16■□□□□ 0.34
SHOX2O60902 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.16■□□□□ 0.34
SHOX2O60902 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.16■□□□□ 0.34
SHOX2O60902 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
SHOX2O60902 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SHOX2O60902 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.16■□□□□ 0.34
SHOX2O60902 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms