Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 SEC1P-202ENST00000473944 940 ntBASIC12.6□□□□□ -0.39
SMKR1H3BMG3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 AC024243.1-201ENST00000609234 778 ntBASIC12.6□□□□□ -0.39
SMKR1H3BMG3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 AC144831.1-201ENST00000573312 2656 ntBASIC12.6□□□□□ -0.39
SMKR1H3BMG3 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SMKR1H3BMG3 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 NUDT16P1-203ENST00000513809 620 ntBASIC12.59□□□□□ -0.39
SMKR1H3BMG3 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 AL353719.1-201ENST00000566847 864 ntBASIC12.59□□□□□ -0.39
SMKR1H3BMG3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 AL023803.3-201ENST00000615559 522 ntBASIC12.59□□□□□ -0.39
SMKR1H3BMG3 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 KRT8P9-201ENST00000558927 1449 ntBASIC12.59□□□□□ -0.39
SMKR1H3BMG3 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC12.59□□□□□ -0.39
SMKR1H3BMG3 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.58□□□□□ -0.39
SMKR1H3BMG3 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
SMKR1H3BMG3 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
SMKR1H3BMG3 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
SMKR1H3BMG3 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 HIST1H2APS4-201ENST00000362070 348 ntBASIC12.58□□□□□ -0.4
SMKR1H3BMG3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 KRT18P65-201ENST00000439811 1286 ntBASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms