Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC025062.2-201ENST00000605477 670 ntBASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 AL589182.2-201ENST00000619332 1049 ntBASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
AP4E1Q9UPM8 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 FRMD8P1-201ENST00000440433 1524 ntBASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 AC092068.3-201ENST00000587894 2016 ntBASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.83■□□□□ 0.45
AP4E1Q9UPM8 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 AL450487.1-201ENST00000426799 995 ntBASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
AP4E1Q9UPM8 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 AL590787.1-201ENST00000568856 1315 ntBASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 AC139887.3-201ENST00000568585 713 ntBASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 AL139424.1-201ENST00000607572 797 ntBASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 TP73-AS1-207ENST00000624167 988 ntBASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
AP4E1Q9UPM8 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.81■□□□□ 0.44
AP4E1Q9UPM8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms