Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 AC016396.2-201ENST00000562575 1417 ntBASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.26■□□□□ 0.03
CLCF1Q9UBD9 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 BCAR1-209ENST00000546196 1340 ntBASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 KRT19P2-202ENST00000557173 1012 ntBASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLCF1Q9UBD9 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 NOC2LP2-201ENST00000407594 1944 ntBASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 FAM185BP-201ENST00000443595 716 ntBASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 ACTL9-202ENST00000612068 1252 ntBASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 AC007064.4-201ENST00000637740 555 ntBASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 EGFEM1P-202ENST00000431685 1563 ntBASIC15.24■□□□□ 0.03
CLCF1Q9UBD9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 AC129492.6-201ENST00000611383 1305 ntBASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.23■□□□□ 0.03
CLCF1Q9UBD9 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms