Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 AC114341.1-201ENST00000618070 349 ntBASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
UPF3BQ9BZI7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
UPF3BQ9BZI7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
UPF3BQ9BZI7 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
UPF3BQ9BZI7 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
UPF3BQ9BZI7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
UPF3BQ9BZI7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
UPF3BQ9BZI7 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
UPF3BQ9BZI7 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.52■□□□□ 0.87
UPF3BQ9BZI7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 AC104819.1-201ENST00000504587 486 ntBASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPF3BQ9BZI7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 PCDHB19P-201ENST00000570871 2371 ntBASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPF3BQ9BZI7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms