Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 ECEL1P3-201ENST00000427961 737 ntBASIC15.42■□□□□ 0.06
CCDC58Q4VC31 TSPY7P-201ENST00000431358 1114 ntBASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 RPS20-210ENST00000523936 899 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 NAPSB-206ENST00000562112 1266 ntBASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.42■□□□□ 0.06
CCDC58Q4VC31 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC026691.1-201ENST00000602502 2017 ntBASIC15.42■□□□□ 0.06
CCDC58Q4VC31 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC105917.1-201ENST00000506637 2539 ntBASIC15.42■□□□□ 0.06
CCDC58Q4VC31 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC58Q4VC31 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 AC096633.1-201ENST00000422446 749 ntBASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 AC004263.2-201ENST00000617183 678 ntBASIC15.41■□□□□ 0.06
CCDC58Q4VC31 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC58Q4VC31 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CCDC58Q4VC31 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms