Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CMC4P56277 KRT18P27-201ENST00000427733 1299 ntBASIC12.8□□□□□ -0.36
CMC4P56277 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.8□□□□□ -0.36
CMC4P56277 FDX1P1-201ENST00000449115 551 ntBASIC12.8□□□□□ -0.36
CMC4P56277 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CMC4P56277 AC124947.2-201ENST00000547118 1133 ntBASIC12.8□□□□□ -0.36
CMC4P56277 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC12.8□□□□□ -0.36
CMC4P56277 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC12.8□□□□□ -0.36
CMC4P56277 LITAF-211ENST00000572255 516 ntTSL 4 BASIC12.8□□□□□ -0.36
CMC4P56277 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
CMC4P56277 SLC25A6P4-201ENST00000586535 553 ntBASIC12.8□□□□□ -0.36
CMC4P56277 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CMC4P56277 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CMC4P56277 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CMC4P56277 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.8□□□□□ -0.36
CMC4P56277 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CMC4P56277 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
CMC4P56277 EGFEM1P-202ENST00000431685 1563 ntBASIC12.8□□□□□ -0.36
CMC4P56277 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
CMC4P56277 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC12.8□□□□□ -0.36
CMC4P56277 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CMC4P56277 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.8□□□□□ -0.36
CMC4P56277 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CMC4P56277 AC068587.6-202ENST00000641839 5619 ntBASIC12.8□□□□□ -0.36
CMC4P56277 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 CD276-203ENST00000537340 2439 ntTSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
CMC4P56277 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC12.79□□□□□ -0.36
CMC4P56277 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 RPS15P9-201ENST00000494093 319 ntBASIC12.79□□□□□ -0.36
CMC4P56277 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC12.79□□□□□ -0.36
CMC4P56277 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC12.79□□□□□ -0.36
CMC4P56277 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 AC008667.4-201ENST00000607370 168 ntBASIC12.79□□□□□ -0.36
CMC4P56277 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC12.79□□□□□ -0.36
CMC4P56277 LINC00896-202ENST00000609602 2128 ntBASIC12.79□□□□□ -0.36
CMC4P56277 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CMC4P56277 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
CMC4P56277 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CMC4P56277 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CMC4P56277 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC12.78□□□□□ -0.36
CMC4P56277 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 MRPL3P1-201ENST00000400109 1033 ntBASIC12.78□□□□□ -0.36
CMC4P56277 MRPL20P1-201ENST00000400819 433 ntBASIC12.78□□□□□ -0.36
CMC4P56277 HNRNPDP1-201ENST00000439535 754 ntBASIC12.78□□□□□ -0.36
CMC4P56277 AC079776.4-201ENST00000511039 504 ntBASIC12.78□□□□□ -0.36
CMC4P56277 AP002490.2-201ENST00000524791 560 ntBASIC12.78□□□□□ -0.36
CMC4P56277 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.78□□□□□ -0.36
CMC4P56277 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 PI4KAP1-204ENST00000612579 1703 ntBASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms