Protein–RNA interactions for Protein: O95292

VAPB, Vesicle-associated membrane protein-associated protein B/C, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPBO95292 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
VAPBO95292 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.3■□□□□ 0.36
VAPBO95292 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.3■□□□□ 0.36
VAPBO95292 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
VAPBO95292 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.3■□□□□ 0.36
VAPBO95292 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.3■□□□□ 0.36
VAPBO95292 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.3■□□□□ 0.36
VAPBO95292 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.3■□□□□ 0.36
VAPBO95292 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.3■□□□□ 0.36
VAPBO95292 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.3■□□□□ 0.36
VAPBO95292 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.3■□□□□ 0.36
VAPBO95292 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.3■□□□□ 0.36
VAPBO95292 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.3■□□□□ 0.36
VAPBO95292 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.3■□□□□ 0.36
VAPBO95292 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.3■□□□□ 0.36
VAPBO95292 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VAPBO95292 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VAPBO95292 AGGF1P2-201ENST00000426656 2106 ntBASIC17.29■□□□□ 0.36
VAPBO95292 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPBO95292 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
VAPBO95292 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VAPBO95292 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VAPBO95292 AL020989.1-201ENST00000422979 469 ntBASIC17.29■□□□□ 0.36
VAPBO95292 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
VAPBO95292 ABCD1P5-201ENST00000445663 754 ntBASIC17.29■□□□□ 0.36
VAPBO95292 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.29■□□□□ 0.36
VAPBO95292 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPBO95292 AC138894.3-201ENST00000603787 634 ntBASIC17.29■□□□□ 0.36
VAPBO95292 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.29■□□□□ 0.36
VAPBO95292 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VAPBO95292 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
VAPBO95292 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.29■□□□□ 0.36
VAPBO95292 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.29■□□□□ 0.36
VAPBO95292 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
VAPBO95292 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VAPBO95292 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.28■□□□□ 0.36
VAPBO95292 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VAPBO95292 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 SPDYE21P-201ENST00000413323 827 ntBASIC17.28■□□□□ 0.36
VAPBO95292 UPK3BP1-201ENST00000428678 509 ntBASIC17.28■□□□□ 0.36
VAPBO95292 SIGLEC30P-201ENST00000455569 941 ntBASIC17.28■□□□□ 0.36
VAPBO95292 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.28■□□□□ 0.36
VAPBO95292 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.28■□□□□ 0.36
VAPBO95292 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
VAPBO95292 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.28■□□□□ 0.36
VAPBO95292 AL591684.3-201ENST00000605187 298 ntBASIC17.28■□□□□ 0.36
VAPBO95292 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VAPBO95292 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.28■□□□□ 0.36
VAPBO95292 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VAPBO95292 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPBO95292 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.27■□□□□ 0.36
VAPBO95292 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VAPBO95292 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VAPBO95292 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms