Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 AL031284.1-201ENST00000419297 478 ntBASIC16.19■□□□□ 0.18
LDB3O75112 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.19■□□□□ 0.18
LDB3O75112 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.19■□□□□ 0.18
LDB3O75112 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.19■□□□□ 0.18
LDB3O75112 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 AC012640.2-201ENST00000561606 901 ntBASIC16.19■□□□□ 0.18
LDB3O75112 AL049840.3-201ENST00000602669 611 ntBASIC16.19■□□□□ 0.18
LDB3O75112 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.19■□□□□ 0.18
LDB3O75112 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
LDB3O75112 AC080080.1-201ENST00000625121 2420 ntBASIC16.19■□□□□ 0.18
LDB3O75112 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.19■□□□□ 0.18
LDB3O75112 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDB3O75112 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.19■□□□□ 0.18
LDB3O75112 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.19■□□□□ 0.18
LDB3O75112 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LDB3O75112 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
LDB3O75112 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.18■□□□□ 0.18
LDB3O75112 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 AC006504.4-201ENST00000592118 1568 ntBASIC16.18■□□□□ 0.18
LDB3O75112 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.18■□□□□ 0.18
LDB3O75112 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
LDB3O75112 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.18■□□□□ 0.18
LDB3O75112 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.18■□□□□ 0.18
LDB3O75112 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.18■□□□□ 0.18
LDB3O75112 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.18■□□□□ 0.18
LDB3O75112 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.18■□□□□ 0.18
LDB3O75112 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.18■□□□□ 0.18
LDB3O75112 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.18■□□□□ 0.18
LDB3O75112 AC006557.2-201ENST00000592985 1240 ntBASIC16.18■□□□□ 0.18
LDB3O75112 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.18■□□□□ 0.18
LDB3O75112 FAM215A-202ENST00000632077 792 ntBASIC16.18■□□□□ 0.18
LDB3O75112 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LDB3O75112 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDB3O75112 AL590787.1-201ENST00000568856 1315 ntBASIC16.18■□□□□ 0.18
LDB3O75112 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 AC092053.1-201ENST00000605787 1936 ntBASIC16.17■□□□□ 0.18
LDB3O75112 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
LDB3O75112 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 RPS2P28-201ENST00000314255 741 ntBASIC16.17■□□□□ 0.18
LDB3O75112 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.17■□□□□ 0.18
LDB3O75112 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.17■□□□□ 0.18
LDB3O75112 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.17■□□□□ 0.18
LDB3O75112 ELK2BP-201ENST00000415014 1224 ntBASIC16.17■□□□□ 0.18
LDB3O75112 AC026396.1-201ENST00000419388 421 ntBASIC16.17■□□□□ 0.18
LDB3O75112 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.17■□□□□ 0.18
LDB3O75112 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.17■□□□□ 0.18
LDB3O75112 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 AL662844.1-201ENST00000546340 181 ntBASIC16.17■□□□□ 0.18
LDB3O75112 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.17■□□□□ 0.18
LDB3O75112 AP001005.1-201ENST00000571755 1248 ntBASIC16.17■□□□□ 0.18
LDB3O75112 MIR7706-201ENST00000613747 67 ntBASIC16.17■□□□□ 0.18
LDB3O75112 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
LDB3O75112 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.17■□□□□ 0.18
LDB3O75112 AC008735.5-201ENST00000623544 497 ntBASIC16.17■□□□□ 0.18
LDB3O75112 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LDB3O75112 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LDB3O75112 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
LDB3O75112 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LDB3O75112 HLA-A-201ENST00000376802 1334 ntBASIC16.17■□□□□ 0.18
LDB3O75112 LINC02012-201ENST00000608206 1725 ntBASIC16.16■□□□□ 0.18
LDB3O75112 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LDB3O75112 AP002414.3-201ENST00000589352 1468 ntBASIC16.16■□□□□ 0.18
LDB3O75112 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
LDB3O75112 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.16■□□□□ 0.18
LDB3O75112 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.16■□□□□ 0.18
LDB3O75112 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.16■□□□□ 0.18
LDB3O75112 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LDB3O75112 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms