Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 AL592071.1-201ENST00000611956 408 ntBASIC16.99■□□□□ 0.31
MKS1Q9NXB0 AD001527.2-201ENST00000622994 785 ntBASIC16.99■□□□□ 0.31
MKS1Q9NXB0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
MKS1Q9NXB0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 AL662844.4-201ENST00000606367 2838 ntBASIC16.98■□□□□ 0.31
MKS1Q9NXB0 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 AC073508.3-201ENST00000619697 1419 ntBASIC16.98■□□□□ 0.31
MKS1Q9NXB0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 TERF1P1-201ENST00000311003 1181 ntBASIC16.98■□□□□ 0.31
MKS1Q9NXB0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 KLF4P1-201ENST00000412782 1185 ntBASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 ME2P1-201ENST00000426028 1970 ntBASIC16.98■□□□□ 0.31
MKS1Q9NXB0 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MKS1Q9NXB0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 TSPY5P-201ENST00000426936 936 ntBASIC16.97■□□□□ 0.31
MKS1Q9NXB0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MKS1Q9NXB0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms