Protein–RNA interactions for Protein: Q9NUP9

LIN7C, Protein lin-7 homolog C, humanhuman

Known RBP Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7CQ9NUP9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.35□□□□□ -0.11
LIN7CQ9NUP9 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.35□□□□□ -0.11
LIN7CQ9NUP9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIN7CQ9NUP9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 MYCLP1-201ENST00000372451 1075 ntBASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 UPK3BP1-201ENST00000428678 509 ntBASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
LIN7CQ9NUP9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 AGGF1P2-201ENST00000426656 2106 ntBASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
LIN7CQ9NUP9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 IGHV3-41-201ENST00000613121 348 ntBASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 FLJ16779-201ENST00000612722 7638 ntBASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 AC016734.2-201ENST00000624325 1377 ntBASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 AC105020.1-201ENST00000435356 2205 ntBASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LIN7CQ9NUP9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 PCDHA14-201ENST00000506751 2298 ntBASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 AC093525.9-201ENST00000624961 1746 ntBASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
LIN7CQ9NUP9 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms