Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
RNF4P78317 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 PP12613-201ENST00000424958 2230 ntBASIC15.94■□□□□ 0.14
RNF4P78317 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
RNF4P78317 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 AC093525.9-201ENST00000624961 1746 ntBASIC15.94■□□□□ 0.14
RNF4P78317 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.94■□□□□ 0.14
RNF4P78317 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
RNF4P78317 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
RNF4P78317 AL139384.1-201ENST00000612143 3047 ntBASIC15.93■□□□□ 0.14
RNF4P78317 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 AC116353.5-201ENST00000638148 1699 ntBASIC15.93■□□□□ 0.14
RNF4P78317 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.93■□□□□ 0.14
RNF4P78317 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
RNF4P78317 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
RNF4P78317 AC009947.1-201ENST00000444350 727 ntBASIC15.93■□□□□ 0.14
RNF4P78317 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.93■□□□□ 0.14
RNF4P78317 AC108751.1-201ENST00000490852 363 ntBASIC15.93■□□□□ 0.14
RNF4P78317 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.93■□□□□ 0.14
RNF4P78317 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.93■□□□□ 0.14
RNF4P78317 AC034105.1-201ENST00000563488 319 ntBASIC15.93■□□□□ 0.14
RNF4P78317 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.93■□□□□ 0.14
RNF4P78317 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.93■□□□□ 0.14
RNF4P78317 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.93■□□□□ 0.14
RNF4P78317 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.93■□□□□ 0.14
RNF4P78317 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
RNF4P78317 PI4KAP1-204ENST00000612579 1703 ntBASIC15.93■□□□□ 0.14
RNF4P78317 PCDHB18P-201ENST00000524813 2368 ntBASIC15.93■□□□□ 0.14
RNF4P78317 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.93■□□□□ 0.14
RNF4P78317 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
RNF4P78317 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RNF4P78317 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.92■□□□□ 0.14
RNF4P78317 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
RNF4P78317 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.92■□□□□ 0.14
RNF4P78317 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
RNF4P78317 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.92■□□□□ 0.14
RNF4P78317 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.92■□□□□ 0.14
RNF4P78317 TERC-201ENST00000602385 541 ntBASIC15.92■□□□□ 0.14
RNF4P78317 GGTLC5P-201ENST00000617623 998 ntBASIC15.92■□□□□ 0.14
RNF4P78317 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
RNF4P78317 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.92■□□□□ 0.14
RNF4P78317 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
RNF4P78317 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
RNF4P78317 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
RNF4P78317 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.92■□□□□ 0.14
RNF4P78317 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.92■□□□□ 0.14
RNF4P78317 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
RNF4P78317 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RNF4P78317 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.92■□□□□ 0.14
RNF4P78317 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC15.91■□□□□ 0.14
RNF4P78317 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.91■□□□□ 0.14
RNF4P78317 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.91■□□□□ 0.14
RNF4P78317 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 SLC25A1P3-201ENST00000395415 828 ntBASIC15.91■□□□□ 0.14
RNF4P78317 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms