Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.3■□□□□ 0.84
HMGB1P09429 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.3■□□□□ 0.84
HMGB1P09429 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.3■□□□□ 0.84
HMGB1P09429 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
HMGB1P09429 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.3■□□□□ 0.84
HMGB1P09429 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HMGB1P09429 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGB1P09429 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HMGB1P09429 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 AC092068.3-201ENST00000587894 2016 ntBASIC20.3■□□□□ 0.84
HMGB1P09429 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGB1P09429 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGB1P09429 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGB1P09429 AL590787.1-201ENST00000568856 1315 ntBASIC20.29■□□□□ 0.84
HMGB1P09429 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.29■□□□□ 0.84
HMGB1P09429 PKD1P1-201ENST00000458669 6805 ntBASIC20.29■□□□□ 0.84
HMGB1P09429 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGB1P09429 AKR1C7P-201ENST00000305623 895 ntBASIC20.29■□□□□ 0.84
HMGB1P09429 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.29■□□□□ 0.84
HMGB1P09429 SART3-203ENST00000546611 1184 ntBASIC20.29■□□□□ 0.84
HMGB1P09429 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGB1P09429 AC064862.7-201ENST00000604520 867 ntBASIC20.29■□□□□ 0.84
HMGB1P09429 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HMGB1P09429 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGB1P09429 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
HMGB1P09429 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.29■□□□□ 0.84
HMGB1P09429 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HMGB1P09429 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGB1P09429 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGB1P09429 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.28■□□□□ 0.84
HMGB1P09429 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 AP002414.1-201ENST00000391405 1147 ntBASIC20.28■□□□□ 0.84
HMGB1P09429 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
HMGB1P09429 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.28■□□□□ 0.84
HMGB1P09429 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.28■□□□□ 0.84
HMGB1P09429 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGB1P09429 MTDHP4-201ENST00000600287 670 ntBASIC20.28■□□□□ 0.84
HMGB1P09429 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HMGB1P09429 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HMGB1P09429 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
HMGB1P09429 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HMGB1P09429 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HMGB1P09429 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGB1P09429 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
HMGB1P09429 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
HMGB1P09429 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGB1P09429 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
HMGB1P09429 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
HMGB1P09429 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGB1P09429 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
HMGB1P09429 AC139887.3-201ENST00000568585 713 ntBASIC20.27■□□□□ 0.84
HMGB1P09429 IFNL4P1-201ENST00000607083 540 ntBASIC20.27■□□□□ 0.84
HMGB1P09429 AL139424.1-201ENST00000607572 797 ntBASIC20.27■□□□□ 0.84
HMGB1P09429 AC012313.10-201ENST00000623509 926 ntBASIC20.27■□□□□ 0.84
HMGB1P09429 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGB1P09429 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.27■□□□□ 0.84
HMGB1P09429 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGB1P09429 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGB1P09429 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
HMGB1P09429 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
HMGB1P09429 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
HMGB1P09429 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HMGB1P09429 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms