Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.49■■□□□ 1.35
PCDHGA1Q9Y5H4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.49■■□□□ 1.35
PCDHGA1Q9Y5H4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHGA1Q9Y5H4 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHGA1Q9Y5H4 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHGA1Q9Y5H4 MIR935-201ENST00000401179 91 ntBASIC23.47■■□□□ 1.35
PCDHGA1Q9Y5H4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHGA1Q9Y5H4 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.47■■□□□ 1.35
PCDHGA1Q9Y5H4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHGA1Q9Y5H4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.46■■□□□ 1.35
PCDHGA1Q9Y5H4 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHGA1Q9Y5H4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHGA1Q9Y5H4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.46■■□□□ 1.35
PCDHGA1Q9Y5H4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.45■■□□□ 1.34
PCDHGA1Q9Y5H4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHGA1Q9Y5H4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHGA1Q9Y5H4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHGA1Q9Y5H4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHGA1Q9Y5H4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHGA1Q9Y5H4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.45■■□□□ 1.34
PCDHGA1Q9Y5H4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHGA1Q9Y5H4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.44■■□□□ 1.34
PCDHGA1Q9Y5H4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.44■■□□□ 1.34
PCDHGA1Q9Y5H4 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
PCDHGA1Q9Y5H4 KRT18P24-201ENST00000344739 1156 ntBASIC23.43■■□□□ 1.34
PCDHGA1Q9Y5H4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.43■■□□□ 1.34
PCDHGA1Q9Y5H4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
PCDHGA1Q9Y5H4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
PCDHGA1Q9Y5H4 KRT16P3-201ENST00000439127 1283 ntBASIC23.42■■□□□ 1.34
PCDHGA1Q9Y5H4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.42■■□□□ 1.34
PCDHGA1Q9Y5H4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHGA1Q9Y5H4 UNC93B8-201ENST00000511903 705 ntBASIC23.41■■□□□ 1.34
PCDHGA1Q9Y5H4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.41■■□□□ 1.34
PCDHGA1Q9Y5H4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
PCDHGA1Q9Y5H4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHGA1Q9Y5H4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.4■■□□□ 1.34
PCDHGA1Q9Y5H4 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
PCDHGA1Q9Y5H4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
PCDHGA1Q9Y5H4 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.39■■□□□ 1.34
PCDHGA1Q9Y5H4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.39■■□□□ 1.34
PCDHGA1Q9Y5H4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.39■■□□□ 1.33
PCDHGA1Q9Y5H4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
PCDHGA1Q9Y5H4 AC137630.3-201ENST00000607245 391 ntBASIC23.39■■□□□ 1.33
PCDHGA1Q9Y5H4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
PCDHGA1Q9Y5H4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.39■■□□□ 1.33
PCDHGA1Q9Y5H4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.33
PCDHGA1Q9Y5H4 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHGA1Q9Y5H4 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHGA1Q9Y5H4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHGA1Q9Y5H4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHGA1Q9Y5H4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHGA1Q9Y5H4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHGA1Q9Y5H4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.37■■□□□ 1.33
PCDHGA1Q9Y5H4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.37■■□□□ 1.33
PCDHGA1Q9Y5H4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHGA1Q9Y5H4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.36■■□□□ 1.33
PCDHGA1Q9Y5H4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHGA1Q9Y5H4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.36■■□□□ 1.33
PCDHGA1Q9Y5H4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.36■■□□□ 1.33
PCDHGA1Q9Y5H4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.36■■□□□ 1.33
PCDHGA1Q9Y5H4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC23.36■■□□□ 1.33
PCDHGA1Q9Y5H4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA1Q9Y5H4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.35■■□□□ 1.33
PCDHGA1Q9Y5H4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA1Q9Y5H4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHGA1Q9Y5H4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.35■■□□□ 1.33
PCDHGA1Q9Y5H4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHGA1Q9Y5H4 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.34■■□□□ 1.33
PCDHGA1Q9Y5H4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGA1Q9Y5H4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGA1Q9Y5H4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHGA1Q9Y5H4 AC021242.3-201ENST00000607598 1377 ntBASIC23.33■■□□□ 1.33
PCDHGA1Q9Y5H4 MIR638-201ENST00000385237 100 ntBASIC23.33■■□□□ 1.33
PCDHGA1Q9Y5H4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.33■■□□□ 1.33
PCDHGA1Q9Y5H4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
PCDHGA1Q9Y5H4 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
PCDHGA1Q9Y5H4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.32■■□□□ 1.32
PCDHGA1Q9Y5H4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.32■■□□□ 1.32
PCDHGA1Q9Y5H4 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHGA1Q9Y5H4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.32■■□□□ 1.32
PCDHGA1Q9Y5H4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGA1Q9Y5H4 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGA1Q9Y5H4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.31■■□□□ 1.32
PCDHGA1Q9Y5H4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.31■■□□□ 1.32
PCDHGA1Q9Y5H4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGA1Q9Y5H4 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
PCDHGA1Q9Y5H4 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHGA1Q9Y5H4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHGA1Q9Y5H4 AL139246.5-201ENST00000606645 996 ntBASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms