Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC31.8■■■□□ 2.68
TRIM35Q9UPQ4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
TRIM35Q9UPQ4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.8■■■□□ 2.68
TRIM35Q9UPQ4 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
TRIM35Q9UPQ4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
TRIM35Q9UPQ4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.79■■■□□ 2.68
TRIM35Q9UPQ4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
TRIM35Q9UPQ4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
TRIM35Q9UPQ4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
TRIM35Q9UPQ4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
TRIM35Q9UPQ4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC31.78■■■□□ 2.68
TRIM35Q9UPQ4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC31.78■■■□□ 2.68
TRIM35Q9UPQ4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
TRIM35Q9UPQ4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
TRIM35Q9UPQ4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
TRIM35Q9UPQ4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.77■■■□□ 2.68
TRIM35Q9UPQ4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
TRIM35Q9UPQ4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
TRIM35Q9UPQ4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.76■■■□□ 2.68
TRIM35Q9UPQ4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.67
TRIM35Q9UPQ4 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.76■■■□□ 2.67
TRIM35Q9UPQ4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.76■■■□□ 2.67
TRIM35Q9UPQ4 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.75■■■□□ 2.67
TRIM35Q9UPQ4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
TRIM35Q9UPQ4 AC004987.1-201ENST00000428627 508 ntBASIC31.75■■■□□ 2.67
TRIM35Q9UPQ4 DUX4L9-201ENST00000449051 1259 ntBASIC31.75■■■□□ 2.67
TRIM35Q9UPQ4 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.75■■■□□ 2.67
TRIM35Q9UPQ4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
TRIM35Q9UPQ4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
TRIM35Q9UPQ4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
TRIM35Q9UPQ4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
TRIM35Q9UPQ4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
TRIM35Q9UPQ4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC31.73■■■□□ 2.67
TRIM35Q9UPQ4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
TRIM35Q9UPQ4 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.73■■■□□ 2.67
TRIM35Q9UPQ4 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
TRIM35Q9UPQ4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
TRIM35Q9UPQ4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31.72■■■□□ 2.67
TRIM35Q9UPQ4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
TRIM35Q9UPQ4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.72■■■□□ 2.67
TRIM35Q9UPQ4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.72■■■□□ 2.67
TRIM35Q9UPQ4 AC012354.3-201ENST00000623734 483 ntBASIC31.72■■■□□ 2.67
TRIM35Q9UPQ4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
TRIM35Q9UPQ4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC31.72■■■□□ 2.67
TRIM35Q9UPQ4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
TRIM35Q9UPQ4 ATP5G2P3-201ENST00000429083 425 ntBASIC31.7■■■□□ 2.67
TRIM35Q9UPQ4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC31.7■■■□□ 2.67
TRIM35Q9UPQ4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.66
TRIM35Q9UPQ4 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.69■■■□□ 2.66
TRIM35Q9UPQ4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
TRIM35Q9UPQ4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
TRIM35Q9UPQ4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
TRIM35Q9UPQ4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.68■■■□□ 2.66
TRIM35Q9UPQ4 ERN1-208ENST00000606895 2068 ntBASIC31.68■■■□□ 2.66
TRIM35Q9UPQ4 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
TRIM35Q9UPQ4 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
TRIM35Q9UPQ4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.68■■■□□ 2.66
TRIM35Q9UPQ4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
TRIM35Q9UPQ4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
TRIM35Q9UPQ4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
TRIM35Q9UPQ4 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
TRIM35Q9UPQ4 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
TRIM35Q9UPQ4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.66■■■□□ 2.66
TRIM35Q9UPQ4 AL033527.3-201ENST00000566366 1196 ntBASIC31.66■■■□□ 2.66
TRIM35Q9UPQ4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC31.66■■■□□ 2.66
TRIM35Q9UPQ4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
TRIM35Q9UPQ4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
TRIM35Q9UPQ4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
TRIM35Q9UPQ4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
TRIM35Q9UPQ4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.65■■■□□ 2.66
TRIM35Q9UPQ4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
TRIM35Q9UPQ4 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.65■■■□□ 2.66
TRIM35Q9UPQ4 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.64■■■□□ 2.66
TRIM35Q9UPQ4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.64■■■□□ 2.66
TRIM35Q9UPQ4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
TRIM35Q9UPQ4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
TRIM35Q9UPQ4 DUX4L18-201ENST00000553347 1267 ntBASIC31.64■■■□□ 2.66
TRIM35Q9UPQ4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
TRIM35Q9UPQ4 TSPY13P-201ENST00000338964 914 ntBASIC31.62■■■□□ 2.65
TRIM35Q9UPQ4 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
TRIM35Q9UPQ4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
TRIM35Q9UPQ4 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.62■■■□□ 2.65
TRIM35Q9UPQ4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
TRIM35Q9UPQ4 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.62■■■□□ 2.65
TRIM35Q9UPQ4 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.62■■■□□ 2.65
TRIM35Q9UPQ4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC31.61■■■□□ 2.65
TRIM35Q9UPQ4 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
TRIM35Q9UPQ4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
TRIM35Q9UPQ4 AC092803.2-201ENST00000564287 1899 ntBASIC31.61■■■□□ 2.65
TRIM35Q9UPQ4 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
TRIM35Q9UPQ4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
TRIM35Q9UPQ4 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
TRIM35Q9UPQ4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 1221.3 ms