Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
USP44Q9H0E7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP44Q9H0E7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
USP44Q9H0E7 AC004987.1-201ENST00000428627 508 ntBASIC30.49■■■□□ 2.47
USP44Q9H0E7 AC012354.3-201ENST00000623734 483 ntBASIC30.49■■■□□ 2.47
USP44Q9H0E7 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP44Q9H0E7 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP44Q9H0E7 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
USP44Q9H0E7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USP44Q9H0E7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
USP44Q9H0E7 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC30.48■■■□□ 2.47
USP44Q9H0E7 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USP44Q9H0E7 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
USP44Q9H0E7 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
USP44Q9H0E7 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
USP44Q9H0E7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USP44Q9H0E7 DUX4L9-201ENST00000449051 1259 ntBASIC30.47■■■□□ 2.47
USP44Q9H0E7 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
USP44Q9H0E7 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC30.46■■■□□ 2.47
USP44Q9H0E7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
USP44Q9H0E7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USP44Q9H0E7 ATP5G2P3-201ENST00000429083 425 ntBASIC30.46■■■□□ 2.47
USP44Q9H0E7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.46■■■□□ 2.47
USP44Q9H0E7 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC30.46■■■□□ 2.47
USP44Q9H0E7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30.46■■■□□ 2.47
USP44Q9H0E7 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.47
USP44Q9H0E7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
USP44Q9H0E7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.45■■■□□ 2.47
USP44Q9H0E7 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
USP44Q9H0E7 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.45■■■□□ 2.46
USP44Q9H0E7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
USP44Q9H0E7 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
USP44Q9H0E7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
USP44Q9H0E7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
USP44Q9H0E7 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC30.43■■■□□ 2.46
USP44Q9H0E7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
USP44Q9H0E7 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
USP44Q9H0E7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USP44Q9H0E7 AL033527.3-201ENST00000566366 1196 ntBASIC30.42■■■□□ 2.46
USP44Q9H0E7 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
USP44Q9H0E7 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC30.41■■■□□ 2.46
USP44Q9H0E7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
USP44Q9H0E7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP44Q9H0E7 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP44Q9H0E7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC30.41■■■□□ 2.46
USP44Q9H0E7 TSPY13P-201ENST00000338964 914 ntBASIC30.4■■■□□ 2.46
USP44Q9H0E7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
USP44Q9H0E7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
USP44Q9H0E7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
USP44Q9H0E7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.4■■■□□ 2.46
USP44Q9H0E7 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP44Q9H0E7 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
USP44Q9H0E7 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
USP44Q9H0E7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
USP44Q9H0E7 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.39■■■□□ 2.46
USP44Q9H0E7 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.39■■■□□ 2.46
USP44Q9H0E7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USP44Q9H0E7 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC30.38■■■□□ 2.45
USP44Q9H0E7 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.38■■■□□ 2.45
USP44Q9H0E7 DUX4L18-201ENST00000553347 1267 ntBASIC30.38■■■□□ 2.45
USP44Q9H0E7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USP44Q9H0E7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP44Q9H0E7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USP44Q9H0E7 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
USP44Q9H0E7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC30.37■■■□□ 2.45
USP44Q9H0E7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC30.36■■■□□ 2.45
USP44Q9H0E7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
USP44Q9H0E7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP44Q9H0E7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC30.36■■■□□ 2.45
USP44Q9H0E7 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP44Q9H0E7 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC30.35■■■□□ 2.45
USP44Q9H0E7 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC30.35■■■□□ 2.45
USP44Q9H0E7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP44Q9H0E7 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USP44Q9H0E7 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.35■■■□□ 2.45
USP44Q9H0E7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.34■■■□□ 2.45
USP44Q9H0E7 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
USP44Q9H0E7 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
USP44Q9H0E7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC30.34■■■□□ 2.45
USP44Q9H0E7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
USP44Q9H0E7 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP44Q9H0E7 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP44Q9H0E7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
USP44Q9H0E7 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP44Q9H0E7 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC30.33■■■□□ 2.45
USP44Q9H0E7 MIR6765-201ENST00000614092 87 ntBASIC30.33■■■□□ 2.45
USP44Q9H0E7 ERN1-208ENST00000606895 2068 ntBASIC30.33■■■□□ 2.45
USP44Q9H0E7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
USP44Q9H0E7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP44Q9H0E7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC30.32■■■□□ 2.44
USP44Q9H0E7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC30.32■■■□□ 2.44
USP44Q9H0E7 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP44Q9H0E7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
USP44Q9H0E7 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USP44Q9H0E7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP44Q9H0E7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC30.31■■■□□ 2.44
USP44Q9H0E7 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
USP44Q9H0E7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP44Q9H0E7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USP44Q9H0E7 AC018755.3-202ENST00000596210 929 ntBASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms