Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.12■■□□□ 1.77
CDX2Q99626 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CDX2Q99626 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CDX2Q99626 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CDX2Q99626 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
CDX2Q99626 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CDX2Q99626 AL359504.2-201ENST00000605506 1601 ntBASIC26.11■■□□□ 1.77
CDX2Q99626 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
CDX2Q99626 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.11■■□□□ 1.77
CDX2Q99626 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.11■■□□□ 1.77
CDX2Q99626 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
CDX2Q99626 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CDX2Q99626 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CDX2Q99626 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
CDX2Q99626 AL356740.2-201ENST00000601559 647 ntBASIC26.09■■□□□ 1.77
CDX2Q99626 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.09■■□□□ 1.77
CDX2Q99626 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.08■■□□□ 1.77
CDX2Q99626 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CDX2Q99626 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.08■■□□□ 1.77
CDX2Q99626 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
CDX2Q99626 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.08■■□□□ 1.77
CDX2Q99626 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CDX2Q99626 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CDX2Q99626 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CDX2Q99626 AC010997.5-201ENST00000609182 354 ntBASIC26.07■■□□□ 1.76
CDX2Q99626 AC106739.1-201ENST00000617035 715 ntBASIC26.07■■□□□ 1.76
CDX2Q99626 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CDX2Q99626 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CDX2Q99626 PBX2P1-201ENST00000493219 1291 ntBASIC26.06■■□□□ 1.76
CDX2Q99626 MIR6724-1-201ENST00000616420 92 ntBASIC26.06■■□□□ 1.76
CDX2Q99626 MIR6724-2-201ENST00000616483 92 ntBASIC26.06■■□□□ 1.76
CDX2Q99626 MIR6724-4-201ENST00000617390 92 ntBASIC26.06■■□□□ 1.76
CDX2Q99626 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.06■■□□□ 1.76
CDX2Q99626 MIR6724-3-201ENST00000622482 92 ntBASIC26.06■■□□□ 1.76
CDX2Q99626 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
CDX2Q99626 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CDX2Q99626 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CDX2Q99626 AC100797.4-201ENST00000631653 1827 ntBASIC26.05■■□□□ 1.76
CDX2Q99626 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CDX2Q99626 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CDX2Q99626 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
CDX2Q99626 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CDX2Q99626 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
CDX2Q99626 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CDX2Q99626 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
CDX2Q99626 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CDX2Q99626 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CDX2Q99626 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CDX2Q99626 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.03■■□□□ 1.76
CDX2Q99626 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CDX2Q99626 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CDX2Q99626 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CDX2Q99626 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26■■□□□ 1.75
CDX2Q99626 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26■■□□□ 1.75
CDX2Q99626 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26■■□□□ 1.75
CDX2Q99626 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26■■□□□ 1.75
CDX2Q99626 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CDX2Q99626 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
CDX2Q99626 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.99■■□□□ 1.75
CDX2Q99626 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CDX2Q99626 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.99■■□□□ 1.75
CDX2Q99626 AC120024.1-201ENST00000562672 995 ntBASIC25.99■■□□□ 1.75
CDX2Q99626 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.99■■□□□ 1.75
CDX2Q99626 AL512631.2-201ENST00000604634 923 ntBASIC25.99■■□□□ 1.75
CDX2Q99626 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
CDX2Q99626 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CDX2Q99626 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CDX2Q99626 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CDX2Q99626 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CDX2Q99626 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.97■■□□□ 1.75
CDX2Q99626 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CDX2Q99626 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
CDX2Q99626 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CDX2Q99626 SUDS3P1-201ENST00000505831 966 ntBASIC25.96■■□□□ 1.75
CDX2Q99626 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.96■■□□□ 1.75
CDX2Q99626 AP004833.2-201ENST00000532228 1454 ntBASIC25.96■■□□□ 1.75
CDX2Q99626 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
CDX2Q99626 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.95■■□□□ 1.75
CDX2Q99626 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.95■■□□□ 1.74
CDX2Q99626 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.95■■□□□ 1.74
CDX2Q99626 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.95■■□□□ 1.74
CDX2Q99626 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC25.95■■□□□ 1.74
CDX2Q99626 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CDX2Q99626 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25.95■■□□□ 1.74
CDX2Q99626 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.94■■□□□ 1.74
CDX2Q99626 MTDHP2-201ENST00000601468 714 ntBASIC25.94■■□□□ 1.74
CDX2Q99626 AL031432.3-201ENST00000607698 485 ntBASIC25.94■■□□□ 1.74
CDX2Q99626 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.93■■□□□ 1.74
CDX2Q99626 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
CDX2Q99626 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CDX2Q99626 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
CDX2Q99626 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.92■■□□□ 1.74
CDX2Q99626 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.92■■□□□ 1.74
CDX2Q99626 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.91■■□□□ 1.74
CDX2Q99626 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.91■■□□□ 1.74
CDX2Q99626 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CDX2Q99626 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.91■■□□□ 1.74
CDX2Q99626 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.91■■□□□ 1.74
CDX2Q99626 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.91■■□□□ 1.74
CDX2Q99626 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms