Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC60Q8IWA6 RARRES2P1-201ENST00000474487 481 ntBASIC27.14■■□□□ 1.94
CCDC60Q8IWA6 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
CCDC60Q8IWA6 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CCDC60Q8IWA6 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 AC010980.1-201ENST00000587192 1142 ntBASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CCDC60Q8IWA6 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC60Q8IWA6 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC27.11■■□□□ 1.93
CCDC60Q8IWA6 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC27.11■■□□□ 1.93
CCDC60Q8IWA6 BHLHE23-202ENST00000612929 1109 ntBASIC27.11■■□□□ 1.93
CCDC60Q8IWA6 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CCDC60Q8IWA6 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.11■■□□□ 1.93
CCDC60Q8IWA6 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CCDC60Q8IWA6 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
CCDC60Q8IWA6 AC139795.1-202ENST00000500444 432 ntBASIC27.1■■□□□ 1.93
CCDC60Q8IWA6 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CCDC60Q8IWA6 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
CCDC60Q8IWA6 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.09■■□□□ 1.93
CCDC60Q8IWA6 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CCDC60Q8IWA6 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.09■■□□□ 1.93
CCDC60Q8IWA6 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
CCDC60Q8IWA6 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC60Q8IWA6 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC60Q8IWA6 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC60Q8IWA6 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CCDC60Q8IWA6 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.08■■□□□ 1.92
CCDC60Q8IWA6 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.08■■□□□ 1.92
CCDC60Q8IWA6 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC60Q8IWA6 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
CCDC60Q8IWA6 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
CCDC60Q8IWA6 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.07■■□□□ 1.92
CCDC60Q8IWA6 PVT1_1.1-201ENST00000615125 194 ntBASIC27.07■■□□□ 1.92
CCDC60Q8IWA6 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC27.07■■□□□ 1.92
CCDC60Q8IWA6 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CCDC60Q8IWA6 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27.06■■□□□ 1.92
CCDC60Q8IWA6 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.05■■□□□ 1.92
CCDC60Q8IWA6 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.05■■□□□ 1.92
CCDC60Q8IWA6 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.05■■□□□ 1.92
CCDC60Q8IWA6 AC074183.2-201ENST00000623112 922 ntBASIC27.05■■□□□ 1.92
CCDC60Q8IWA6 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.05■■□□□ 1.92
CCDC60Q8IWA6 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CCDC60Q8IWA6 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
CCDC60Q8IWA6 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC27.03■■□□□ 1.92
CCDC60Q8IWA6 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CCDC60Q8IWA6 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC27.02■■□□□ 1.92
CCDC60Q8IWA6 AC087393.1-201ENST00000582896 145 ntBASIC27.02■■□□□ 1.92
CCDC60Q8IWA6 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
CCDC60Q8IWA6 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 PKM-203ENST00000389093 2279 ntTSL 5 BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
CCDC60Q8IWA6 RPS2P7-201ENST00000447334 885 ntBASIC27■■□□□ 1.91
CCDC60Q8IWA6 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27■■□□□ 1.91
CCDC60Q8IWA6 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
CCDC60Q8IWA6 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC27■■□□□ 1.91
CCDC60Q8IWA6 KRT8P33-201ENST00000508125 1423 ntBASIC26.99■■□□□ 1.91
CCDC60Q8IWA6 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
CCDC60Q8IWA6 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.99■■□□□ 1.91
CCDC60Q8IWA6 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC60Q8IWA6 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
CCDC60Q8IWA6 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CCDC60Q8IWA6 AC103834.1-201ENST00000520383 144 ntBASIC26.98■■□□□ 1.91
CCDC60Q8IWA6 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.97■■□□□ 1.91
CCDC60Q8IWA6 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC60Q8IWA6 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CCDC60Q8IWA6 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.96■■□□□ 1.91
CCDC60Q8IWA6 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.96■■□□□ 1.91
CCDC60Q8IWA6 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC60Q8IWA6 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CCDC60Q8IWA6 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.96■■□□□ 1.91
CCDC60Q8IWA6 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.96■■□□□ 1.91
CCDC60Q8IWA6 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.96■■□□□ 1.91
CCDC60Q8IWA6 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.95■■□□□ 1.91
CCDC60Q8IWA6 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.95■■□□□ 1.9
CCDC60Q8IWA6 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.95■■□□□ 1.9
CCDC60Q8IWA6 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.95■■□□□ 1.9
CCDC60Q8IWA6 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC60Q8IWA6 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC60Q8IWA6 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC60Q8IWA6 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms