Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.64■■□□□ 1.37
PTCHD3Q3KNS1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.64■■□□□ 1.37
PTCHD3Q3KNS1 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTCHD3Q3KNS1 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTCHD3Q3KNS1 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.63■■□□□ 1.37
PTCHD3Q3KNS1 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTCHD3Q3KNS1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTCHD3Q3KNS1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTCHD3Q3KNS1 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PTCHD3Q3KNS1 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.62■■□□□ 1.37
PTCHD3Q3KNS1 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PTCHD3Q3KNS1 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PTCHD3Q3KNS1 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.61■■□□□ 1.37
PTCHD3Q3KNS1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PTCHD3Q3KNS1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.61■■□□□ 1.37
PTCHD3Q3KNS1 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 ERN1-208ENST00000606895 2068 ntBASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTCHD3Q3KNS1 AC012354.3-201ENST00000623734 483 ntBASIC23.59■■□□□ 1.37
PTCHD3Q3KNS1 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
PTCHD3Q3KNS1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTCHD3Q3KNS1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.59■■□□□ 1.37
PTCHD3Q3KNS1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PTCHD3Q3KNS1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTCHD3Q3KNS1 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.59■■□□□ 1.37
PTCHD3Q3KNS1 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 AC025884.2-201ENST00000553429 711 ntBASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PTCHD3Q3KNS1 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.57■■□□□ 1.36
PTCHD3Q3KNS1 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.57■■□□□ 1.36
PTCHD3Q3KNS1 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PTCHD3Q3KNS1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PTCHD3Q3KNS1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PTCHD3Q3KNS1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PTCHD3Q3KNS1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PTCHD3Q3KNS1 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PTCHD3Q3KNS1 SMPD5-203ENST00000639008 1464 ntBASIC23.56■■□□□ 1.36
PTCHD3Q3KNS1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
PTCHD3Q3KNS1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
PTCHD3Q3KNS1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PTCHD3Q3KNS1 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.55■■□□□ 1.36
PTCHD3Q3KNS1 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PTCHD3Q3KNS1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
PTCHD3Q3KNS1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
PTCHD3Q3KNS1 AC010501.1-201ENST00000606270 1962 ntBASIC23.54■■□□□ 1.36
PTCHD3Q3KNS1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.54■■□□□ 1.36
PTCHD3Q3KNS1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.54■■□□□ 1.36
PTCHD3Q3KNS1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
PTCHD3Q3KNS1 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.54■■□□□ 1.36
PTCHD3Q3KNS1 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PTCHD3Q3KNS1 AC007029.1-201ENST00000604183 313 ntBASIC23.53■■□□□ 1.36
PTCHD3Q3KNS1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
PTCHD3Q3KNS1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PTCHD3Q3KNS1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PTCHD3Q3KNS1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PTCHD3Q3KNS1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PTCHD3Q3KNS1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 KRT18P60-201ENST00000312876 1297 ntBASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.52■■□□□ 1.36
PTCHD3Q3KNS1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
PTCHD3Q3KNS1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 AL033527.3-201ENST00000566366 1196 ntBASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PTCHD3Q3KNS1 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.49■■□□□ 1.35
PTCHD3Q3KNS1 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD3Q3KNS1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD3Q3KNS1 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD3Q3KNS1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PTCHD3Q3KNS1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.49■■□□□ 1.35
PTCHD3Q3KNS1 MIR3960-201ENST00000583311 91 ntBASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms