Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
SHROOM1Q2M3G4 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM1Q2M3G4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
SHROOM1Q2M3G4 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM1Q2M3G4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC28.63■■■□□ 2.17
SHROOM1Q2M3G4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC28.63■■■□□ 2.17
SHROOM1Q2M3G4 YBX1P4-201ENST00000392794 808 ntBASIC28.62■■■□□ 2.17
SHROOM1Q2M3G4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM1Q2M3G4 AC103724.3-201ENST00000564481 992 ntBASIC28.62■■■□□ 2.17
SHROOM1Q2M3G4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM1Q2M3G4 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM1Q2M3G4 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM1Q2M3G4 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM1Q2M3G4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM1Q2M3G4 MIR4508-201ENST00000584178 70 ntBASIC28.61■■■□□ 2.17
SHROOM1Q2M3G4 BX255925.1-201ENST00000566954 1854 ntBASIC28.61■■■□□ 2.17
SHROOM1Q2M3G4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM1Q2M3G4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC28.6■■■□□ 2.17
SHROOM1Q2M3G4 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM1Q2M3G4 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM1Q2M3G4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM1Q2M3G4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM1Q2M3G4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM1Q2M3G4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC28.59■■■□□ 2.17
SHROOM1Q2M3G4 AC087393.1-201ENST00000582896 145 ntBASIC28.59■■■□□ 2.17
SHROOM1Q2M3G4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM1Q2M3G4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM1Q2M3G4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC28.59■■■□□ 2.17
SHROOM1Q2M3G4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC28.58■■■□□ 2.17
SHROOM1Q2M3G4 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM1Q2M3G4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.58■■■□□ 2.17
SHROOM1Q2M3G4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM1Q2M3G4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.57■■■□□ 2.16
SHROOM1Q2M3G4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.57■■■□□ 2.16
SHROOM1Q2M3G4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.57■■■□□ 2.16
SHROOM1Q2M3G4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM1Q2M3G4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM1Q2M3G4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM1Q2M3G4 RPS2P7-201ENST00000447334 885 ntBASIC28.56■■■□□ 2.16
SHROOM1Q2M3G4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC28.56■■■□□ 2.16
SHROOM1Q2M3G4 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM1Q2M3G4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM1Q2M3G4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM1Q2M3G4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM1Q2M3G4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
SHROOM1Q2M3G4 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM1Q2M3G4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM1Q2M3G4 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM1Q2M3G4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM1Q2M3G4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM1Q2M3G4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.53■■■□□ 2.16
SHROOM1Q2M3G4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM1Q2M3G4 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM1Q2M3G4 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC28.53■■■□□ 2.16
SHROOM1Q2M3G4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM1Q2M3G4 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
SHROOM1Q2M3G4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM1Q2M3G4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC28.52■■■□□ 2.16
SHROOM1Q2M3G4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC28.51■■■□□ 2.15
SHROOM1Q2M3G4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM1Q2M3G4 LONRF2P2-201ENST00000439212 571 ntBASIC28.51■■■□□ 2.15
SHROOM1Q2M3G4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC28.51■■■□□ 2.15
SHROOM1Q2M3G4 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
SHROOM1Q2M3G4 AC142472.1-201ENST00000612013 1741 ntBASIC28.51■■■□□ 2.15
SHROOM1Q2M3G4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC28.5■■■□□ 2.15
SHROOM1Q2M3G4 AP004609.3-201ENST00000610705 1884 ntBASIC28.49■■■□□ 2.15
SHROOM1Q2M3G4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC28.49■■■□□ 2.15
SHROOM1Q2M3G4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM1Q2M3G4 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC28.49■■■□□ 2.15
SHROOM1Q2M3G4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHROOM1Q2M3G4 AL031848.2-201ENST00000607670 837 ntBASIC28.48■■■□□ 2.15
SHROOM1Q2M3G4 AC142086.6-201ENST00000621154 1765 ntBASIC28.47■■■□□ 2.15
SHROOM1Q2M3G4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHROOM1Q2M3G4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.47■■■□□ 2.15
SHROOM1Q2M3G4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC28.47■■■□□ 2.15
SHROOM1Q2M3G4 OR2A1-AS1-204ENST00000470435 602 ntBASIC28.47■■■□□ 2.15
SHROOM1Q2M3G4 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC28.47■■■□□ 2.15
SHROOM1Q2M3G4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
SHROOM1Q2M3G4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM1Q2M3G4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
SHROOM1Q2M3G4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC28.46■■■□□ 2.15
SHROOM1Q2M3G4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC28.46■■■□□ 2.15
SHROOM1Q2M3G4 AC019171.1-201ENST00000601251 1056 ntBASIC28.46■■■□□ 2.15
SHROOM1Q2M3G4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SHROOM1Q2M3G4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
SHROOM1Q2M3G4 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM1Q2M3G4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM1Q2M3G4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHROOM1Q2M3G4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM1Q2M3G4 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM1Q2M3G4 HES6-204ENST00000409182 863 ntTSL 2 BASIC28.44■■■□□ 2.14
SHROOM1Q2M3G4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC28.44■■■□□ 2.14
SHROOM1Q2M3G4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms