Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CXCL12P48061 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CXCL12P48061 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC24.54■■□□□ 1.52
CXCL12P48061 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.54■■□□□ 1.52
CXCL12P48061 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CXCL12P48061 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.53■■□□□ 1.52
CXCL12P48061 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
CXCL12P48061 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
CXCL12P48061 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CXCL12P48061 KRT18P24-201ENST00000344739 1156 ntBASIC24.52■■□□□ 1.52
CXCL12P48061 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.52■■□□□ 1.52
CXCL12P48061 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.51■■□□□ 1.51
CXCL12P48061 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CXCL12P48061 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CXCL12P48061 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CXCL12P48061 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
CXCL12P48061 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CXCL12P48061 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CXCL12P48061 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CXCL12P48061 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
CXCL12P48061 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.5■■□□□ 1.51
CXCL12P48061 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CXCL12P48061 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.49■■□□□ 1.51
CXCL12P48061 MIR638-201ENST00000385237 100 ntBASIC24.49■■□□□ 1.51
CXCL12P48061 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.49■■□□□ 1.51
CXCL12P48061 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.48■■□□□ 1.51
CXCL12P48061 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.48■■□□□ 1.51
CXCL12P48061 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CXCL12P48061 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC24.47■■□□□ 1.51
CXCL12P48061 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.47■■□□□ 1.51
CXCL12P48061 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CXCL12P48061 TSPY9P-201ENST00000440215 945 ntBASIC24.46■■□□□ 1.51
CXCL12P48061 TSPY11P-201ENST00000442607 1045 ntBASIC24.46■■□□□ 1.51
CXCL12P48061 AC137630.3-201ENST00000607245 391 ntBASIC24.46■■□□□ 1.51
CXCL12P48061 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.46■■□□□ 1.51
CXCL12P48061 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.51
CXCL12P48061 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CXCL12P48061 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CXCL12P48061 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.45■■□□□ 1.5
CXCL12P48061 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CXCL12P48061 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.45■■□□□ 1.5
CXCL12P48061 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.44■■□□□ 1.5
CXCL12P48061 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
CXCL12P48061 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CXCL12P48061 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
CXCL12P48061 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.44■■□□□ 1.5
CXCL12P48061 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.43■■□□□ 1.5
CXCL12P48061 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.43■■□□□ 1.5
CXCL12P48061 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.43■■□□□ 1.5
CXCL12P48061 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.43■■□□□ 1.5
CXCL12P48061 AL139246.5-201ENST00000606645 996 ntBASIC24.43■■□□□ 1.5
CXCL12P48061 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CXCL12P48061 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
CXCL12P48061 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.42■■□□□ 1.5
CXCL12P48061 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CXCL12P48061 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CXCL12P48061 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CXCL12P48061 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CXCL12P48061 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CXCL12P48061 AC021242.3-201ENST00000607598 1377 ntBASIC24.42■■□□□ 1.5
CXCL12P48061 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CXCL12P48061 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.41■■□□□ 1.5
CXCL12P48061 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.41■■□□□ 1.5
CXCL12P48061 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CXCL12P48061 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.41■■□□□ 1.5
CXCL12P48061 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
CXCL12P48061 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.4■■□□□ 1.5
CXCL12P48061 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CXCL12P48061 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.4■■□□□ 1.5
CXCL12P48061 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CXCL12P48061 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.49
CXCL12P48061 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CXCL12P48061 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.39■■□□□ 1.49
CXCL12P48061 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.39■■□□□ 1.49
CXCL12P48061 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CXCL12P48061 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.39■■□□□ 1.49
CXCL12P48061 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
CXCL12P48061 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CXCL12P48061 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CXCL12P48061 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CXCL12P48061 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.38■■□□□ 1.49
CXCL12P48061 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.38■■□□□ 1.49
CXCL12P48061 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.38■■□□□ 1.49
CXCL12P48061 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CXCL12P48061 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CXCL12P48061 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CXCL12P48061 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CXCL12P48061 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.37■■□□□ 1.49
CXCL12P48061 AC120024.1-201ENST00000562672 995 ntBASIC24.37■■□□□ 1.49
CXCL12P48061 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.37■■□□□ 1.49
CXCL12P48061 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.37■■□□□ 1.49
CXCL12P48061 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CXCL12P48061 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.37■■□□□ 1.49
CXCL12P48061 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
CXCL12P48061 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.36■■□□□ 1.49
CXCL12P48061 AC092028.1-203ENST00000608262 953 ntBASIC24.36■■□□□ 1.49
CXCL12P48061 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
CXCL12P48061 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.35■■□□□ 1.49
CXCL12P48061 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CXCL12P48061 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.35■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms