Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
NPHP4O75161 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
NPHP4O75161 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
NPHP4O75161 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC35.02■■■■□ 3.2
NPHP4O75161 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC35.02■■■■□ 3.2
NPHP4O75161 AL117332.1-201ENST00000622628 974 ntBASIC35.02■■■■□ 3.2
NPHP4O75161 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
NPHP4O75161 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC35.01■■■■□ 3.2
NPHP4O75161 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC35.01■■■■□ 3.2
NPHP4O75161 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC35.01■■■■□ 3.2
NPHP4O75161 RARRES2P6-201ENST00000567333 442 ntBASIC35.01■■■■□ 3.2
NPHP4O75161 AC092666.2-201ENST00000613287 246 ntBASIC35.01■■■■□ 3.2
NPHP4O75161 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC35.01■■■■□ 3.2
NPHP4O75161 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
NPHP4O75161 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC35■■■■□ 3.19
NPHP4O75161 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
NPHP4O75161 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC35■■■■□ 3.19
NPHP4O75161 AP002414.2-202ENST00000590929 1450 ntBASIC35■■■■□ 3.19
NPHP4O75161 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC34.99■■■■□ 3.19
NPHP4O75161 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC34.99■■■■□ 3.19
NPHP4O75161 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC34.99■■■■□ 3.19
NPHP4O75161 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC34.98■■■■□ 3.19
NPHP4O75161 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC34.98■■■■□ 3.19
NPHP4O75161 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
NPHP4O75161 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC34.98■■■■□ 3.19
NPHP4O75161 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC34.98■■■■□ 3.19
NPHP4O75161 GUK1-205ENST00000366722 850 ntTSL 3 BASIC34.98■■■■□ 3.19
NPHP4O75161 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC34.98■■■■□ 3.19
NPHP4O75161 AC096631.2-201ENST00000436136 790 ntBASIC34.98■■■■□ 3.19
NPHP4O75161 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC34.97■■■■□ 3.19
NPHP4O75161 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC34.97■■■■□ 3.19
NPHP4O75161 WHAMMP3-201ENST00000611636 1609 ntBASIC34.97■■■■□ 3.19
NPHP4O75161 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
NPHP4O75161 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC34.96■■■■□ 3.19
NPHP4O75161 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC34.96■■■■□ 3.19
NPHP4O75161 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC34.96■■■■□ 3.19
NPHP4O75161 AC092028.1-203ENST00000608262 953 ntBASIC34.96■■■■□ 3.19
NPHP4O75161 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC34.95■■■■□ 3.19
NPHP4O75161 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC34.95■■■■□ 3.19
NPHP4O75161 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC34.94■■■■□ 3.18
NPHP4O75161 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC34.94■■■■□ 3.18
NPHP4O75161 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC34.94■■■■□ 3.18
NPHP4O75161 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
NPHP4O75161 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC34.93■■■■□ 3.18
NPHP4O75161 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC34.93■■■■□ 3.18
NPHP4O75161 ST7-AS1-201ENST00000456775 1889 ntBASIC34.93■■■■□ 3.18
NPHP4O75161 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC34.93■■■■□ 3.18
NPHP4O75161 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC34.92■■■■□ 3.18
NPHP4O75161 AC133561.4-201ENST00000566112 224 ntBASIC34.91■■■■□ 3.18
NPHP4O75161 MIR3621-201ENST00000580529 85 ntBASIC34.91■■■■□ 3.18
NPHP4O75161 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC34.91■■■■□ 3.18
NPHP4O75161 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
NPHP4O75161 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
NPHP4O75161 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
NPHP4O75161 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC34.9■■■■□ 3.18
NPHP4O75161 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
NPHP4O75161 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
NPHP4O75161 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC34.89■■■■□ 3.18
NPHP4O75161 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
NPHP4O75161 ZNRF2P3-201ENST00000424200 374 ntBASIC34.88■■■■□ 3.17
NPHP4O75161 AC120024.1-201ENST00000562672 995 ntBASIC34.88■■■■□ 3.17
NPHP4O75161 MIR4466-201ENST00000606121 54 ntBASIC34.88■■■■□ 3.17
NPHP4O75161 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC34.87■■■■□ 3.17
NPHP4O75161 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC34.87■■■■□ 3.17
NPHP4O75161 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC34.86■■■■□ 3.17
NPHP4O75161 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC34.86■■■■□ 3.17
NPHP4O75161 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC34.86■■■■□ 3.17
NPHP4O75161 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
NPHP4O75161 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC34.86■■■■□ 3.17
NPHP4O75161 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
NPHP4O75161 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
NPHP4O75161 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC34.86■■■■□ 3.17
NPHP4O75161 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC34.86■■■■□ 3.17
NPHP4O75161 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
NPHP4O75161 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
NPHP4O75161 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
NPHP4O75161 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
NPHP4O75161 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC34.84■■■■□ 3.17
NPHP4O75161 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC34.84■■■■□ 3.17
NPHP4O75161 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
NPHP4O75161 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC34.83■■■■□ 3.17
NPHP4O75161 AC026271.2-201ENST00000428091 497 ntBASIC34.83■■■■□ 3.17
NPHP4O75161 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC34.83■■■■□ 3.17
NPHP4O75161 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC34.83■■■■□ 3.17
NPHP4O75161 EBPL-204ENST00000378272 766 ntTSL 3 BASIC34.82■■■■□ 3.17
NPHP4O75161 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC34.82■■■■□ 3.17
NPHP4O75161 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC34.82■■■■□ 3.16
NPHP4O75161 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
NPHP4O75161 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
NPHP4O75161 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC34.81■■■■□ 3.16
NPHP4O75161 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC34.81■■■■□ 3.16
NPHP4O75161 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC34.8■■■■□ 3.16
NPHP4O75161 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
NPHP4O75161 MIR6724-1-201ENST00000616420 92 ntBASIC34.8■■■■□ 3.16
NPHP4O75161 MIR6724-2-201ENST00000616483 92 ntBASIC34.8■■■■□ 3.16
NPHP4O75161 MIR6724-4-201ENST00000617390 92 ntBASIC34.8■■■■□ 3.16
NPHP4O75161 MIR6724-3-201ENST00000622482 92 ntBASIC34.8■■■■□ 3.16
NPHP4O75161 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
NPHP4O75161 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC34.79■■■■□ 3.16
NPHP4O75161 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC34.79■■■■□ 3.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms