Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
TRIM13O60858 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.72■■□□□ 1.39
TRIM13O60858 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM13O60858 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM13O60858 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.71■■□□□ 1.39
TRIM13O60858 AL139125.2-201ENST00000623134 1869 ntBASIC23.71■■□□□ 1.39
TRIM13O60858 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM13O60858 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM13O60858 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM13O60858 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM13O60858 AL359504.2-201ENST00000605506 1601 ntBASIC23.7■■□□□ 1.39
TRIM13O60858 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM13O60858 AL359258.2-201ENST00000564063 1566 ntBASIC23.7■■□□□ 1.38
TRIM13O60858 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM13O60858 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.7■■□□□ 1.38
TRIM13O60858 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.7■■□□□ 1.38
TRIM13O60858 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM13O60858 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.7■■□□□ 1.38
TRIM13O60858 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM13O60858 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM13O60858 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM13O60858 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM13O60858 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.69■■□□□ 1.38
TRIM13O60858 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
TRIM13O60858 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM13O60858 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM13O60858 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.69■■□□□ 1.38
TRIM13O60858 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM13O60858 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM13O60858 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM13O60858 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM13O60858 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
TRIM13O60858 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM13O60858 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
TRIM13O60858 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM13O60858 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.68■■□□□ 1.38
TRIM13O60858 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.68■■□□□ 1.38
TRIM13O60858 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM13O60858 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM13O60858 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM13O60858 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM13O60858 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM13O60858 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
TRIM13O60858 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM13O60858 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.67■■□□□ 1.38
TRIM13O60858 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM13O60858 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM13O60858 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM13O60858 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.66■■□□□ 1.38
TRIM13O60858 DUX4L11-201ENST00000611504 1267 ntBASIC23.66■■□□□ 1.38
TRIM13O60858 DUX4L12-201ENST00000614593 1267 ntBASIC23.66■■□□□ 1.38
TRIM13O60858 DUX4L14-201ENST00000621227 1267 ntBASIC23.66■■□□□ 1.38
TRIM13O60858 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM13O60858 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
TRIM13O60858 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM13O60858 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM13O60858 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM13O60858 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM13O60858 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM13O60858 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM13O60858 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM13O60858 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM13O60858 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
TRIM13O60858 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM13O60858 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM13O60858 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
TRIM13O60858 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
TRIM13O60858 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM13O60858 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM13O60858 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM13O60858 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.64■■□□□ 1.37
TRIM13O60858 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM13O60858 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM13O60858 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM13O60858 HLA-V-202ENST00000446817 847 ntBASIC23.63■■□□□ 1.37
TRIM13O60858 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
TRIM13O60858 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
TRIM13O60858 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM13O60858 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM13O60858 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM13O60858 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.62■■□□□ 1.37
TRIM13O60858 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.62■■□□□ 1.37
TRIM13O60858 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM13O60858 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM13O60858 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.61■■□□□ 1.37
TRIM13O60858 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM13O60858 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TRIM13O60858 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TRIM13O60858 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
TRIM13O60858 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.6■■□□□ 1.37
TRIM13O60858 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TRIM13O60858 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TRIM13O60858 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms