Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CACNA1FO60840 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
CACNA1FO60840 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CACNA1FO60840 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CACNA1FO60840 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.92■■■□□ 2.54
CACNA1FO60840 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.91■■■□□ 2.54
CACNA1FO60840 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC30.91■■■□□ 2.54
CACNA1FO60840 TSPY13P-201ENST00000338964 914 ntBASIC30.91■■■□□ 2.54
CACNA1FO60840 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.91■■■□□ 2.54
CACNA1FO60840 IDNK-203ENST00000405990 629 ntTSL 2 BASIC30.9■■■□□ 2.54
CACNA1FO60840 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.9■■■□□ 2.54
CACNA1FO60840 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
CACNA1FO60840 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
CACNA1FO60840 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CACNA1FO60840 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CACNA1FO60840 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CACNA1FO60840 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
CACNA1FO60840 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
CACNA1FO60840 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC30.89■■■□□ 2.54
CACNA1FO60840 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CACNA1FO60840 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.88■■■□□ 2.53
CACNA1FO60840 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC30.88■■■□□ 2.53
CACNA1FO60840 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
CACNA1FO60840 MIR6765-201ENST00000614092 87 ntBASIC30.88■■■□□ 2.53
CACNA1FO60840 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CACNA1FO60840 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CACNA1FO60840 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
CACNA1FO60840 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC30.87■■■□□ 2.53
CACNA1FO60840 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CACNA1FO60840 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC30.87■■■□□ 2.53
CACNA1FO60840 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CACNA1FO60840 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.86■■■□□ 2.53
CACNA1FO60840 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CACNA1FO60840 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CACNA1FO60840 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
CACNA1FO60840 AC004987.1-201ENST00000428627 508 ntBASIC30.85■■■□□ 2.53
CACNA1FO60840 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
CACNA1FO60840 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.85■■■□□ 2.53
CACNA1FO60840 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
CACNA1FO60840 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
CACNA1FO60840 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.84■■■□□ 2.53
CACNA1FO60840 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC30.84■■■□□ 2.53
CACNA1FO60840 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC30.84■■■□□ 2.53
CACNA1FO60840 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CACNA1FO60840 AL033527.3-201ENST00000566366 1196 ntBASIC30.83■■■□□ 2.53
CACNA1FO60840 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CACNA1FO60840 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CACNA1FO60840 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC30.82■■■□□ 2.52
CACNA1FO60840 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC30.82■■■□□ 2.52
CACNA1FO60840 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.82■■■□□ 2.52
CACNA1FO60840 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC30.82■■■□□ 2.52
CACNA1FO60840 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CACNA1FO60840 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
CACNA1FO60840 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CACNA1FO60840 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
CACNA1FO60840 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CACNA1FO60840 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CACNA1FO60840 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CACNA1FO60840 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CACNA1FO60840 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC30.81■■■□□ 2.52
CACNA1FO60840 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
CACNA1FO60840 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CACNA1FO60840 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CACNA1FO60840 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CACNA1FO60840 KRT18P10-201ENST00000388836 1287 ntBASIC30.8■■■□□ 2.52
CACNA1FO60840 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CACNA1FO60840 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CACNA1FO60840 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
CACNA1FO60840 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CACNA1FO60840 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CACNA1FO60840 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
CACNA1FO60840 ATP5G2P3-201ENST00000429083 425 ntBASIC30.79■■■□□ 2.52
CACNA1FO60840 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC30.79■■■□□ 2.52
CACNA1FO60840 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.79■■■□□ 2.52
CACNA1FO60840 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CACNA1FO60840 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CACNA1FO60840 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CACNA1FO60840 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CACNA1FO60840 HYI-210ENST00000486909 905 ntTSL 5 BASIC30.77■■■□□ 2.52
CACNA1FO60840 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.77■■■□□ 2.52
CACNA1FO60840 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CACNA1FO60840 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.52
CACNA1FO60840 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CACNA1FO60840 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CACNA1FO60840 AC092803.2-201ENST00000564287 1899 ntBASIC30.76■■■□□ 2.51
CACNA1FO60840 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC30.76■■■□□ 2.51
CACNA1FO60840 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CACNA1FO60840 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CACNA1FO60840 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CACNA1FO60840 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC30.75■■■□□ 2.51
CACNA1FO60840 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.75■■■□□ 2.51
CACNA1FO60840 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC30.75■■■□□ 2.51
CACNA1FO60840 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CACNA1FO60840 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CACNA1FO60840 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CACNA1FO60840 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC30.75■■■□□ 2.51
CACNA1FO60840 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CACNA1FO60840 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.74■■■□□ 2.51
CACNA1FO60840 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CACNA1FO60840 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC30.74■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms