Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CHKB-CPT1BH3BT56 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHKB-CPT1BH3BT56 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHKB-CPT1BH3BT56 AC079834.2-201ENST00000609776 1949 ntBASIC13.7□□□□□ -0.22
CHKB-CPT1BH3BT56 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHKB-CPT1BH3BT56 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CHKB-CPT1BH3BT56 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CHKB-CPT1BH3BT56 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHKB-CPT1BH3BT56 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CHKB-CPT1BH3BT56 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHKB-CPT1BH3BT56 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHKB-CPT1BH3BT56 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 THRA-202ENST00000394121 2260 ntTSL 2 BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHKB-CPT1BH3BT56 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 AIRN-201ENST00000601203 4374 ntBASIC13.67□□□□□ -0.22
CHKB-CPT1BH3BT56 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CHKB-CPT1BH3BT56 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CHKB-CPT1BH3BT56 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC13.64□□□□□ -0.23
CHKB-CPT1BH3BT56 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CHKB-CPT1BH3BT56 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CHKB-CPT1BH3BT56 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CHKB-CPT1BH3BT56 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 DRD5P2-201ENST00000421395 2012 ntBASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms